Factsheet for Zm00001d012311_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017025_P001
Zm00001d018206_P001
Zm00001d031769_P001
Zm00001d049995_P001
Zm00001d052139_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	Zm00001d017025_P001	AT1G77760.1	21798944
AT1G12840.1	Zm00001d018206_P001	AT1G77760.1	21798944
AT1G12840.1	Zm00001d031769_P001	AT1G77760.1	21798944
AT1G12840.1	Zm00001d049995_P001	AT1G77760.1	21798944
AT1G12840.1	Zm00001d052139_P001	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039157_P001	Maize	plastid	32.84	17.51
Zm00001d044665_P001	Maize	plastid	30.85	16.45
VIT_17s0000g00460.t01	Wine grape	cytosol, plastid	29.85	16.0
KRH62549	Soybean	mitochondrion	10.95	15.94
VIT_14s0068g01280.t01	Wine grape	mitochondrion	28.86	15.47
AT1G12840.1	Thale cress	cytosol	27.86	14.93
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	27.86	14.89
CDY66539	Canola	cytosol	27.86	14.89
CDY21070	Canola	cytosol	27.86	14.89
CDX71966	Canola	cytosol	27.86	14.81
CDX98037	Canola	cytosol	27.36	14.67
Bra019792.1-P	Field mustard	cytosol	27.36	14.67
CDY19421	Canola	cytosol	26.87	14.32
CDY16036	Canola	cytosol	27.86	11.81
Bra026951.1-P	Field mustard	cytosol	27.86	9.84
Solyc03g097800.2.1	Tomato	nucleus	3.98	9.2
CDY26596	Canola	cytosol	27.86	9.12
GSMUA_AchrUn_...	Banana	cytosol	6.97	9.09
CDY05652	Canola	cytosol	2.49	5.88
GSMUA_Achr4P08840_001	Banana	cytosol	3.48	5.22

Protein Annotations

EnsemblPlants:Zm00001d012311_P001	EnsemblPlants:Zm00001d012311_T001	EnsemblPlantsGene:Zm00001d012311	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0033180	InterPro:ATPase_V1-cplx_csu	InterPro:Vac_ATP_synth_c_sf	PFAM:PF03223	ProteinID:AQK99318.1
SEG:seg	SUPFAM:SSF118203	UniParc:UPI00084277D9	UniProt:A0A1D6G843	MapMan:35.2	:

Description

V-type proton ATPase subunit C

Coordinates

chr8:-:172208290..172208965

Molecular Weight (calculated)

22067.2 Da

IEP (calculated)

10.449

GRAVY (calculated)

-0.351

Length

201 amino acids

Sequence
(BLAST)

001: MGHRWRSSPS PQIMNLCSVS SSIAKPPWVG TWNQPDHTNQ TTASSPERSL TAGALGDTLL DDVAARAVTR RRHHSSLWSH LQDSIFHHSF DTPLYRFNVP
101: ELRVDTLDSL LALSDDLVKV RRTRFPLFAL LLAQALGSGS VSSCVCLYTH SPMLSCRVCR TRFEGRSRTS STPKVSRAGP SPSTASPPTP SSTMKCKVHS
201: P

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.