CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68044
CDX79234
CDX87505
CDX88386
CDY26836
CDY68886

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	CDX68044	AT1G77760.1	21798944
AT1G12840.1	CDX79234	AT1G77760.1	21798944
AT1G12840.1	CDX87505	AT1G77760.1	21798944
AT1G12840.1	CDX88386	AT1G77760.1	21798944
AT1G12840.1	CDY26836	AT1G77760.1	21798944
AT1G12840.1	CDY68886	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	99.47	99.47
CDY21070	Canola	cytosol	99.47	99.47
CDX98037	Canola	cytosol	96.54	96.8
CDX71966	Canola	cytosol	96.54	96.03
CDY19421	Canola	cytosol	96.01	95.76
AT1G12840.1	Thale cress	cytosol	95.48	95.73
KRG94673	Soybean	endoplasmic reticulum	83.78	83.55
VIT_14s0068g01280.t01	Wine grape	mitochondrion	81.91	82.13
KRH08399	Soybean	endoplasmic reticulum	81.38	81.6
KRH70055	Soybean	endoplasmic reticulum	81.12	81.33
KRH06855	Soybean	endoplasmic reticulum	82.18	80.47
Solyc03g097790.2.1	Tomato	plastid	63.3	78.55
GSMUA_Achr4P08830_001	Banana	mitochondrion, plastid	51.86	76.47
EES20054	Sorghum	plastid	76.6	76.39
CDY16036	Canola	cytosol	96.28	76.37
Os05t0593100-01	Rice	plasma membrane	76.06	75.86
Zm00001d039157_P001	Maize	plastid	75.8	75.6
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	51.86	75.58
Zm00001d044665_P001	Maize	plastid	75.27	75.07
TraesCS1A01G440200.1	Wheat	cytosol	73.14	72.37
TraesCS1B01G475400.3	Wheat	golgi	73.14	72.37
TraesCS1D01G449200.3	Wheat	cytosol	72.87	72.11
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	73.67	70.3
KXG22879	Sorghum	plastid	76.06	69.42
TraesCS1B01G291300.1	Wheat	cytosol	59.57	59.42
TraesCS1D01G281400.1	Wheat	cytosol	59.31	59.15
CDY26596	Canola	cytosol	96.54	59.12
TraesCS1A01G282100.1	Wheat	cytosol	59.31	58.99
CDY05652	Canola	cytosol	11.97	52.94
TraesCS7A01G285700.1	Wheat	cytosol	18.35	47.59
TraesCS5A01G063700.1	Wheat	cytosol	30.32	47.11
Zm00001d012311_P001	Maize	plastid	14.89	27.86

Protein Annotations

Gene3D:1.20.1460.10	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	GO:A0A078JII8	UniProt:A0A078JII8
InterPro:ATPase_V1-cplx_csu	EnsemblPlants:CDY66539	ProteinID:CDY66539	ProteinID:CDY66539.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015078
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0033180	EnsemblPlantsGene:GSBRNA2T00054509001	PFAM:PF03223
PANTHER:PTHR10137	PANTHER:PTHR10137:SF0	SUPFAM:SSF118203	UniParc:UPI0004EDAF0A	InterPro:Vac_ATP_synth_c_sf	SEG:seg

Description

BnaCnng51300DV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A078JII8]

Coordinates

chrLK035313:+:10049..12620

Molecular Weight (calculated)

42763.7 Da

IEP (calculated)

5.353

GRAVY (calculated)

-0.309

Length

376 amino acids

Sequence
(BLAST)

001: MTSRYWVVSL PVKDSSSSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVENIQSQVA KIEDDLKVRV AEYNNVRGQL NAINRKQSGS LAVRDLSNLV KPEDIVASEH LVTLLAVVPK YSQKDWLACY
201: ETLTEYVVPR SSKKLFEDNE YALYTVTLFS RVADNYRTSA REKGFQIRDF EHSVEAQETR KQELEKLVQD QESLRTSLLQ WCYTSYGEVF SSWMHFCAVR
301: IFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DGGAAMAGLA GDSETHPYVS FTINLA

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.