CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
vacuole 2
mitochondrion 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16605
KRH16606
KRH18814
KRH18816
KRH53180

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	KRH16605	AT1G77760.1	21798944
AT1G12840.1	KRH16606	AT1G77760.1	21798944
AT1G12840.1	KRH18814	AT1G77760.1	21798944
AT1G12840.1	KRH18816	AT1G77760.1	21798944
AT1G12840.1	KRH53180	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08399	Soybean	endoplasmic reticulum	97.07	97.07
KRG94673	Soybean	endoplasmic reticulum	89.6	89.12
KRH06855	Soybean	endoplasmic reticulum	88.53	86.46
VIT_14s0068g01280.t01	Wine grape	mitochondrion	83.73	83.73
CDY66539	Canola	cytosol	81.33	81.12
AT1G12840.1	Thale cress	cytosol	81.07	81.07
Bra019792.1-P	Field mustard	cytosol	81.07	81.07
CDX98037	Canola	cytosol	81.07	81.07
CDY19421	Canola	cytosol	81.07	80.64
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	80.8	80.59
CDY21070	Canola	cytosol	80.8	80.59
CDX71966	Canola	cytosol	80.53	79.89
Solyc03g097790.2.1	Tomato	plastid	64.53	79.87
GSMUA_Achr4P08830_001	Banana	mitochondrion, plastid	52.0	76.47
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	50.93	74.03
CDY16036	Canola	cytosol	80.27	63.5
KRH62549	Soybean	mitochondrion	21.6	58.7
Bra026951.1-P	Field mustard	cytosol	80.8	53.25
CDY26596	Canola	cytosol	80.8	49.35
CDY05652	Canola	cytosol	10.13	44.71

Protein Annotations

Gene3D:1.20.1460.10	EntrezGene:100790694	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	EMBL:ACUP02000745
InterPro:ATPase_V1-cplx_csu	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G065500	GO:GO:0000221	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008553	GO:GO:0015078	GO:GO:0015991
GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0033180	GO:GO:0046961	UniProt:I1JCZ0
EnsemblPlants:KRH70055	ProteinID:KRH70055	ProteinID:KRH70055.1	PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0
SUPFAM:SSF118203	UniParc:UPI0002336EFD	InterPro:Vac_ATP_synth_c_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:5825365..5829800

Molecular Weight (calculated)

42514.2 Da

IEP (calculated)

5.744

GRAVY (calculated)

-0.301

Length

375 amino acids

Sequence
(BLAST)

001: MATRYWVVSL PVQNSASTLW NKLQEQISKH SFDTPLYRFN IPNLRVGTLD SLLSLSDDTV KSNSFVEGVS HKIRRQIEEL ERVSGVVSSG LTVDGVPVDS
101: YLTRFVWDEA RYPTMSPLKE IIDGIHGQVA KIEDDLKVRV SEYNNIRSQL NAINRKQTGS LAVRDLSNLV KPEDIITSEN LTTLLAIVPK YSQKDWLSSY
201: ETLTNYVVPR SSKKLYEDNE YVLYTVTLFS RVADNFRTSA REKGFQIRDF EYSHESYDSR KQELEKLVED QESLRSSLLQ WCYASYGEVF SSWMHFCAVR
301: VFTESILRYG LPPSFLACVL APSVKAEKKV RSILEGLSGS SNSAYWKTED EGVGMAGLAG DADAHPYVSF TINLV

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.