Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- vacuole 2
- mitochondrion 5
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
22908117
nucleus: 25464976 plastid: 26371478 unclear: 26455813 nucleus: 28394025 endoplasmic reticulum: 29145071 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc11g013810.1.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G12840.1 | Solyc11g013810.1.1 | AT1G77760.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr4P08830_001 | Banana | mitochondrion, plastid | 63.04 | 74.9 |
GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 61.72 | 72.48 |
KRG94673 | Soybean | endoplasmic reticulum | 81.52 | 65.52 |
VIT_17s0000g00460.t01 | Wine grape | cytosol, plastid | 80.86 | 65.33 |
KRH08399 | Soybean | endoplasmic reticulum | 80.2 | 64.8 |
KRH70055 | Soybean | endoplasmic reticulum | 79.87 | 64.53 |
CDY19421 | Canola | cytosol | 79.54 | 63.93 |
Bra019792.1-P | Field mustard | cytosol | 78.88 | 63.73 |
CDX98037 | Canola | cytosol | 78.88 | 63.73 |
CDY21070 | Canola | cytosol | 78.55 | 63.3 |
CDY66539 | Canola | cytosol | 78.55 | 63.3 |
KRH06855 | Soybean | endoplasmic reticulum | 80.2 | 63.28 |
Bra016752.1-P | Field mustard | cytosol, mitochondrion, plastid | 78.22 | 63.03 |
AT1G12840.1 | Thale cress | cytosol | 77.89 | 62.93 |
CDX71966 | Canola | cytosol | 77.56 | 62.17 |
CDY16036 | Canola | cytosol | 77.89 | 49.79 |
Bra026951.1-P | Field mustard | cytosol | 77.89 | 41.48 |
CDY26596 | Canola | cytosol | 77.89 | 38.44 |
CDY05652 | Canola | cytosol | 10.56 | 37.65 |
Solyc03g097800.2.1 | Tomato | nucleus | 0.66 | 2.3 |
Protein Annotations
Gene3D:1.20.1460.10 | MapMan:24.1.1.2.3 | Gene3D:3.30.70.100 | Gene3D:3.30.70.1180 | InterPro:ATPase_V1-cplx_csu | GO:GO:0000221 |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0008553 |
GO:GO:0015078 | GO:GO:0015991 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0033180 |
GO:GO:0046961 | UniProt:K4BJJ6 | PFAM:PF03223 | PANTHER:PTHR10137 | PANTHER:PTHR10137:SF0 | SUPFAM:SSF118203 |
EnsemblPlantsGene:Solyc03g097790.2 | EnsemblPlants:Solyc03g097790.2.1 | UniParc:UPI0002768586 | InterPro:Vac_ATP_synth_c_sf | SEG:seg | : |
Description
V-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:K4BJJ6]
Coordinates
chr3:+:60117937..60129983
Molecular Weight (calculated)
34865.0 Da
IEP (calculated)
5.789
GRAVY (calculated)
-0.482
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRYWVVSL PVQQNSSTTS LWSRLQESIS RHSFDTPLYR FNIPNLRVGT LDSLLALSDD LIKSNSFIEG VCSKTRRQIE ELERVSGVLS SSLTVDGVPV
101: DSYLTRFAWD EAKYPTMSPL KEIVDGIHSQ VAKIEDDLKV RVSEYNNVRS QLNAINRKQT GSLAVRDLSN LVKPADVVTS EHLTTLLAVV SKYSQKDWLS
201: SYETLTTYVV PRSSKMLYED NEYALYTVTL FNRDADNFKN KARERGFQIR DFEHNPETQE SRKQELEKLM QDQETFRSSL LQWCYTSYGE NSNNLVYYIL
301: TSL
101: DSYLTRFAWD EAKYPTMSPL KEIVDGIHSQ VAKIEDDLKV RVSEYNNVRS QLNAINRKQT GSLAVRDLSN LVKPADVVTS EHLTTLLAVV SKYSQKDWLS
201: SYETLTTYVV PRSSKMLYED NEYALYTVTL FNRDADNFKN KARERGFQIR DFEHNPETQE SRKQELEKLM QDQETFRSSL LQWCYTSYGE NSNNLVYYIL
301: TSL
001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA
Arabidopsis Description
VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.