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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • vacuole 2
  • mitochondrion 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid, vacuole
BaCelLo:plastid
ChloroP:plastid
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:vacuole
Predotar:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc11g013810.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12840.1 Solyc11g013810.1.1 AT1G77760.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr4P08830_001 Banana mitochondrion, plastid 63.04 74.9
GSMUA_AchrUn_... Banana mitochondrion, plastid 61.72 72.48
KRG94673 Soybean endoplasmic reticulum 81.52 65.52
VIT_17s0000g00460.t01 Wine grape cytosol, plastid 80.86 65.33
KRH08399 Soybean endoplasmic reticulum 80.2 64.8
KRH70055 Soybean endoplasmic reticulum 79.87 64.53
CDY19421 Canola cytosol 79.54 63.93
Bra019792.1-P Field mustard cytosol 78.88 63.73
CDX98037 Canola cytosol 78.88 63.73
CDY21070 Canola cytosol 78.55 63.3
CDY66539 Canola cytosol 78.55 63.3
KRH06855 Soybean endoplasmic reticulum 80.2 63.28
Bra016752.1-P Field mustard cytosol, mitochondrion, plastid 78.22 63.03
AT1G12840.1 Thale cress cytosol 77.89 62.93
CDX71966 Canola cytosol 77.56 62.17
CDY16036 Canola cytosol 77.89 49.79
Bra026951.1-P Field mustard cytosol 77.89 41.48
CDY26596 Canola cytosol 77.89 38.44
CDY05652 Canola cytosol 10.56 37.65
Solyc03g097800.2.1 Tomato nucleus 0.66 2.3
Protein Annotations
Gene3D:1.20.1460.10MapMan:24.1.1.2.3Gene3D:3.30.70.100Gene3D:3.30.70.1180InterPro:ATPase_V1-cplx_csuGO:GO:0000221
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005773GO:GO:0006810GO:GO:0006811GO:GO:0008150GO:GO:0008553
GO:GO:0015078GO:GO:0015991GO:GO:0015992GO:GO:0016020GO:GO:0016787GO:GO:0033180
GO:GO:0046961UniProt:K4BJJ6PFAM:PF03223PANTHER:PTHR10137PANTHER:PTHR10137:SF0SUPFAM:SSF118203
EnsemblPlantsGene:Solyc03g097790.2EnsemblPlants:Solyc03g097790.2.1UniParc:UPI0002768586InterPro:Vac_ATP_synth_c_sfSEG:seg:
Description
V-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:K4BJJ6]
Coordinates
chr3:+:60117937..60129983
Molecular Weight (calculated)
34865.0 Da
IEP (calculated)
5.789
GRAVY (calculated)
-0.482
Length
303 amino acids
Sequence
(BLAST)
001: MASRYWVVSL PVQQNSSTTS LWSRLQESIS RHSFDTPLYR FNIPNLRVGT LDSLLALSDD LIKSNSFIEG VCSKTRRQIE ELERVSGVLS SSLTVDGVPV
101: DSYLTRFAWD EAKYPTMSPL KEIVDGIHSQ VAKIEDDLKV RVSEYNNVRS QLNAINRKQT GSLAVRDLSN LVKPADVVTS EHLTTLLAVV SKYSQKDWLS
201: SYETLTTYVV PRSSKMLYED NEYALYTVTL FNRDADNFKN KARERGFQIR DFEHNPETQE SRKQELEKLM QDQETFRSSL LQWCYTSYGE NSNNLVYYIL
301: TSL
Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)
001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA
Arabidopsis Description
VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.