Factsheet for Bra026951.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003670.1-P
Bra008333.1-P
Bra015656.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	Bra003670.1-P	AT1G77760.1	21798944
AT1G12840.1	Bra008333.1-P	AT1G77760.1	21798944
AT1G12840.1	Bra015656.1-P	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019792.1-P	Field mustard	cytosol	63.97	97.07
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	63.8	96.54
AT1G12840.1	Thale cress	cytosol	63.44	96.27
CDY26596	Canola	cytosol	91.21	84.53
VIT_14s0068g01280.t01	Wine grape	mitochondrion	53.95	81.87
KRG94673	Soybean	endoplasmic reticulum	54.13	81.7
KRH08399	Soybean	endoplasmic reticulum	53.43	81.07
KRH70055	Soybean	endoplasmic reticulum	53.25	80.8
KRH06855	Soybean	endoplasmic reticulum	53.25	78.91
Solyc03g097790.2.1	Tomato	plastid	41.48	77.89
GSMUA_Achr4P08830_001	Banana	mitochondrion, plastid	34.45	76.86
EES20054	Sorghum	plastid	50.44	76.13
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	34.45	75.97
Os05t0593100-01	Rice	plasma membrane	50.26	75.86
Zm00001d039157_P001	Maize	plastid	49.56	74.8
Zm00001d044665_P001	Maize	plastid	49.56	74.8
TraesCS1A01G440200.1	Wheat	cytosol	47.98	71.84
TraesCS1B01G475400.3	Wheat	golgi	47.98	71.84
TraesCS1D01G449200.3	Wheat	cytosol	47.8	71.58
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	48.33	69.8
KXG22879	Sorghum	plastid	49.74	68.69
TraesCS1B01G291300.1	Wheat	cytosol	39.02	58.89
TraesCS1D01G281400.1	Wheat	cytosol	38.84	58.62
TraesCS1A01G282100.1	Wheat	cytosol	38.84	58.47
TraesCS7A01G285700.1	Wheat	cytosol	12.13	47.59
TraesCS5A01G063700.1	Wheat	cytosol	20.21	47.52
Zm00001d012311_P001	Maize	plastid	9.84	27.86

Protein Annotations

Gene3D:1.20.1460.10	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	InterPro:ATPase_V1-cplx_csu	EnsemblPlantsGene:Bra026951
EnsemblPlants:Bra026951.1	EnsemblPlants:Bra026951.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0033180	UniProt:M4EDU1	PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0
SUPFAM:SSF118203	UniParc:UPI0002542F86	InterPro:Vac_ATP_synth_c_sf	SEG:seg	:	:

Description

AT1G12840 (E=3e-192) DET3, ATVHA-C | DET3 (DE-ETIOLATED 3); proton-transporting ATPase, rotational mechanism

Coordinates

chrA09:-:34452316..34456383

Molecular Weight (calculated)

65136.6 Da

IEP (calculated)

5.344

GRAVY (calculated)

-0.286

Length

569 amino acids

Sequence
(BLAST)

001: MTSRYWVVSL PVKDSSSTLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVENIQSQVA KIEDDLKVRV AEYNNVRGQL NAINRKQSGS LAVRDLSSLV KPEDIVASEH LETLLAVVPK YSQKDWLACY
201: ETLTDFVVPR SSKKLFEDNE YALYTVTLFT RVADNFRTNA REKGFQVRDF EHSVEAQETR KQELEKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: IFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAGGAMAG LAGDSETHPY VSFTINLDSD EFLKLVEEER GYTVVKTFCH
401: VVTWMPFMDQ ALLPSCIIFS PGWLHVLNEV MRKNLLKYIN VKECAAEAEF FYHGPSFILP NVACSCSNCD DYRDLHIRSD SALLTEKQWS CPNPQRGKIY
501: DREQMENRLV QIVRQSEKMY QIQDLLCIRC NQVKAAHLTE QCECAGSFRC KESGSDFLKR MEVFLDIIS

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.