CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES07601
EES13985
OQU85223

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	EES07601	AT1G77760.1	21798944
AT1G12840.1	EES13985	AT1G77760.1	21798944
AT1G12840.1	OQU85223	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044665_P001	Maize	plastid	88.11	96.29
EES20054	Sorghum	plastid	86.17	94.16
Os05t0593100-01	Rice	plasma membrane	84.47	92.31
TraesCS1B01G475400.3	Wheat	golgi	78.16	84.74
TraesCS1A01G440200.1	Wheat	cytosol	78.16	84.74
TraesCS1D01G449200.3	Wheat	cytosol	77.91	84.47
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	78.4	81.98
VIT_17s0000g00460.t01	Wine grape	cytosol, plastid	70.15	77.07
VIT_14s0068g01280.t01	Wine grape	mitochondrion	69.9	76.8
GSMUA_Achr4P08840_001	Banana	cytosol	24.76	76.12
CDY21070	Canola	cytosol	69.42	76.06
CDY66539	Canola	cytosol	69.42	76.06
CDY19421	Canola	cytosol	69.42	75.86
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	69.17	75.8
CDX98037	Canola	cytosol	68.93	75.73
Bra019792.1-P	Field mustard	cytosol	68.93	75.73
AT1G12840.1	Thale cress	cytosol	68.45	75.2
CDX71966	Canola	cytosol	68.45	74.6
Solyc03g097800.2.1	Tomato	nucleus	15.29	72.41
GSMUA_AchrUn_...	Banana	cytosol	25.97	69.48
TraesCS1A01G282100.1	Wheat	cytosol	63.59	69.31
TraesCS1D01G281400.1	Wheat	cytosol	63.11	68.97
TraesCS1B01G291300.1	Wheat	cytosol	62.38	68.17
CDY16036	Canola	cytosol	68.69	59.7
Bra026951.1-P	Field mustard	cytosol	68.69	49.74
CDY26596	Canola	cytosol	68.69	46.09
KRH62549	Soybean	mitochondrion	15.29	45.65
CDY05652	Canola	cytosol	8.98	43.53

Protein Annotations

Gene3D:1.20.1460.10	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	UniProt:A0A1B6PAR6	InterPro:ATPase_V1-cplx_csu
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150
GO:GO:0015078	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0033180	EnsemblPlants:KXG22879
ProteinID:KXG22879	ProteinID:KXG22879.1	PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0	EnsemblPlantsGene:SORBI_3008G021200
SUPFAM:SSF118203	UniParc:UPI00081AD66A	InterPro:Vac_ATP_synth_c_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:1834003..1837994

Molecular Weight (calculated)

46293.9 Da

IEP (calculated)

6.195

GRAVY (calculated)

-0.302

Length

412 amino acids

Sequence
(BLAST)

001: MGPAQRHSSP LPGVPRSPPR RDPSSPSDQT RCSAAMATRY WIVSLPVQSP GATATSLWPR LQDAISRHSF DTPLYRFNVP DLRVGTLDSL LALSDDLVKS
101: NVFVEGVSHK IRRQIEDLER AGGVDSGALT VDGVPVDTYL TRFVWDEGKY PTMSPLKEIV GSIQTQVAKI EDDMKVRAAE YNNVRSQLSA INRKQSGSLA
201: VRDLSNLVKP EDMVSSEHLV TLLAIVPKYS QKDWLSSYES LDTFVVPRSS KQLYEDNEYA LYTVTLFAKV VDNFKVRARE KGFQIRDFEY SPEAQESRKQ
301: EMEKLLQDQE AMRTSLLQWC YASYSEVFSS WMHFCAVRIF VESILRYGLP PSFLSAVLAP STKGEKKVRS ILEELCGNVH SIYWKAEDDV AVAGLGGESE
401: VHPYVSFTVN FV

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.