Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71966 | Canola | cytosol | 61.24 | 99.47 |
| CDX98037 | Canola | cytosol | 59.28 | 97.07 |
| CDY21070 | Canola | cytosol | 59.12 | 96.54 |
| CDY66539 | Canola | cytosol | 59.12 | 96.54 |
| CDY19421 | Canola | cytosol | 59.12 | 96.29 |
| AT1G12840.1 | Thale cress | cytosol | 58.79 | 96.27 |
| CDY16036 | Canola | cytosol | 74.27 | 96.2 |
| Bra026951.1-P | Field mustard | cytosol | 84.53 | 91.21 |
| VIT_14s0068g01280.t01 | Wine grape | mitochondrion | 50.0 | 81.87 |
| KRG94673 | Soybean | endoplasmic reticulum | 50.16 | 81.7 |
| KRH08399 | Soybean | endoplasmic reticulum | 49.51 | 81.07 |
| KRH70055 | Soybean | endoplasmic reticulum | 49.35 | 80.8 |
| KRH06855 | Soybean | endoplasmic reticulum | 49.35 | 78.91 |
| Solyc03g097790.2.1 | Tomato | plastid | 38.44 | 77.89 |
| GSMUA_Achr4P08830_001 | Banana | mitochondrion, plastid | 31.92 | 76.86 |
| EES20054 | Sorghum | plastid | 46.74 | 76.13 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 31.92 | 75.97 |
| Os05t0593100-01 | Rice | plasma membrane | 46.58 | 75.86 |
| Zm00001d044665_P001 | Maize | plastid | 45.93 | 74.8 |
| Zm00001d039157_P001 | Maize | plastid | 45.93 | 74.8 |
| TraesCS1A01G440200.1 | Wheat | cytosol | 44.46 | 71.84 |
| TraesCS1B01G475400.3 | Wheat | golgi | 44.46 | 71.84 |
| TraesCS1D01G449200.3 | Wheat | cytosol | 44.3 | 71.58 |
| HORVU1Hr1G094800.2 | Barley | cytosol, endoplasmic reticulum, mitochondrion | 44.79 | 69.8 |
| KXG22879 | Sorghum | plastid | 46.09 | 68.69 |
| TraesCS1B01G291300.1 | Wheat | cytosol | 36.16 | 58.89 |
| TraesCS1D01G281400.1 | Wheat | cytosol | 35.99 | 58.62 |
| TraesCS1A01G282100.1 | Wheat | cytosol | 35.99 | 58.47 |
| CDY05652 | Canola | cytosol | 7.33 | 52.94 |
| TraesCS7A01G285700.1 | Wheat | cytosol | 11.24 | 47.59 |
| TraesCS5A01G063700.1 | Wheat | cytosol | 18.73 | 47.52 |
| Zm00001d012311_P001 | Maize | plastid | 9.12 | 27.86 |
Protein Annotations
| Gene3D:1.20.1460.10 | MapMan:24.1.1.2.3 | Gene3D:3.30.70.100 | Gene3D:3.30.70.1180 | GO:A0A078GMR2 | UniProt:A0A078GMR2 |
| InterPro:ATPase_V1-cplx_csu | EnsemblPlants:CDY26596 | ProteinID:CDY26596 | ProteinID:CDY26596.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0015078 |
| GO:GO:0015991 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0033180 | EnsemblPlantsGene:GSBRNA2T00035467001 | PFAM:PF03223 |
| PANTHER:PTHR10137 | PANTHER:PTHR10137:SF0 | SUPFAM:SSF118203 | UniParc:UPI0004EEEA54 | InterPro:Vac_ATP_synth_c_sf | SEG:seg |
Description
BnaA09g46810DV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A078GMR2]
Coordinates
chrLK032192:+:278417..282540
Molecular Weight (calculated)
70524.9 Da
IEP (calculated)
6.858
GRAVY (calculated)
-0.391
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSRYWVVSL PVKDSSSTLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVENIQSQVA KIEDDLKVRV AEYNNVRGQL NAINRKQSGS LAVRDLSSLV KPEDIVASEH LETLLAVVPK YSQKDWLACY
201: ETLTDFVVPR SSKKLFEDNE YALYTVTLFT RVADNFRTNA REKGFQVRDF EHSVEAQETR KQELEKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: IFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAGGAMAG LAGDSETHPY VSFTINLDSD EFLKLVEEER GYTVVKTFCH
401: VVTWMPFMDQ ALLPSCIIFS PGWLHVLNEG HFFFFESKEE KGQLREFRGR DNRTSQGTDT IQCISGFWSS SQRRLLVGIN TNDLCCCYGS RPKRSARCSG
501: NEKESVEVHK CKRICRYYLT RSNQRLALLT EKQWSCPDPQ RGKIYHREQM ENRLVQIVRQ SEKMYQIQDL LCIRCNQVKA AHLTEQCECA GSFRCKESGS
601: DFLKRMEVFL DIIS
101: YLTRFVWDEA KYPTMSPLKE VVENIQSQVA KIEDDLKVRV AEYNNVRGQL NAINRKQSGS LAVRDLSSLV KPEDIVASEH LETLLAVVPK YSQKDWLACY
201: ETLTDFVVPR SSKKLFEDNE YALYTVTLFT RVADNFRTNA REKGFQVRDF EHSVEAQETR KQELEKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: IFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAGGAMAG LAGDSETHPY VSFTINLDSD EFLKLVEEER GYTVVKTFCH
401: VVTWMPFMDQ ALLPSCIIFS PGWLHVLNEG HFFFFESKEE KGQLREFRGR DNRTSQGTDT IQCISGFWSS SQRRLLVGIN TNDLCCCYGS RPKRSARCSG
501: NEKESVEVHK CKRICRYYLT RSNQRLALLT EKQWSCPDPQ RGKIYHREQM ENRLVQIVRQ SEKMYQIQDL LCIRCNQVKA AHLTEQCECA GSFRCKESGS
601: DFLKRMEVFL DIIS
001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA
Arabidopsis Description
VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.