Factsheet for Zm00001d044665_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017025_P001
Zm00001d018206_P001
Zm00001d031769_P001
Zm00001d049995_P001
Zm00001d052139_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	Zm00001d017025_P001	AT1G77760.1	21798944
AT1G12840.1	Zm00001d018206_P001	AT1G77760.1	21798944
AT1G12840.1	Zm00001d031769_P001	AT1G77760.1	21798944
AT1G12840.1	Zm00001d049995_P001	AT1G77760.1	21798944
AT1G12840.1	Zm00001d052139_P001	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039157_P001	Maize	plastid	92.04	92.04
Os05t0593100-01	Rice	plasma membrane	91.25	91.25
KXG22879	Sorghum	plastid	96.29	88.11
TraesCS1B01G475400.3	Wheat	golgi	84.62	83.95
TraesCS1A01G440200.1	Wheat	cytosol	84.62	83.95
TraesCS1D01G449200.3	Wheat	cytosol	84.35	83.68
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	83.82	80.2
VIT_17s0000g00460.t01	Wine grape	cytosol, plastid	76.39	76.8
VIT_14s0068g01280.t01	Wine grape	mitochondrion	75.33	75.73
CDY21070	Canola	cytosol	75.07	75.27
CDY66539	Canola	cytosol	75.07	75.27
CDY19421	Canola	cytosol	75.07	75.07
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	74.8	75.0
AT1G12840.1	Thale cress	cytosol	74.54	74.93
CDX98037	Canola	cytosol	74.54	74.93
Bra019792.1-P	Field mustard	cytosol	74.54	74.93
CDX71966	Canola	cytosol	74.54	74.34
GSMUA_Achr4P08840_001	Banana	cytosol	26.26	73.88
Solyc03g097800.2.1	Tomato	nucleus	16.71	72.41
TraesCS1A01G282100.1	Wheat	cytosol	67.9	67.72
GSMUA_AchrUn_...	Banana	cytosol	27.59	67.53
TraesCS1D01G281400.1	Wheat	cytosol	67.37	67.37
TraesCS1B01G291300.1	Wheat	cytosol	66.84	66.84
CDY16036	Canola	cytosol	74.8	59.49
Bra026951.1-P	Field mustard	cytosol	74.8	49.56
CDY26596	Canola	cytosol	74.8	45.93
KRH62549	Soybean	mitochondrion	16.71	45.65
CDY05652	Canola	cytosol	9.81	43.53
Zm00001d012311_P001	Maize	plastid	16.45	30.85

Protein Annotations

Gene3D:1.20.1460.10	EntrezGene:100274416	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	InterPro:ATPase_V1-cplx_csu
UniProt:B4G0U0	EMBL:BT042978	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006811	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020
GO:GO:0033180	ProteinID:ONM42210.1	PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0	SUPFAM:SSF118203
UniParc:UPI00017B7759	InterPro:Vac_ATP_synth_c_sf	EnsemblPlantsGene:Zm00001d044665	EnsemblPlants:Zm00001d044665_P001	EnsemblPlants:Zm00001d044665_T001	SEG:seg

Description

V-type proton ATPase subunit C

Coordinates

chr3:+:234410699..234416546

Molecular Weight (calculated)

42622.7 Da

IEP (calculated)

5.323

GRAVY (calculated)

-0.192

Length

377 amino acids

Sequence
(BLAST)

001: MATRYWIVSL PVQSPGATAT SLWSRLQDGI SRHSFDTPLY RFNVPDLRVG TLDSLLALSD DLVKSNVFVE GVSHKIRRQI EDLERAGGVD SGALTVDGVP
101: VDTYLTRFVW DEGKYPTMSS LKEIVGSIQS QVAKIEDDMK VRAAEYNNVR SQLTAINRKQ SGSLAVRDLS NLVKPEDMVC SEHLVTLLAI VPKYSQKDWL
201: SSYESLDTFV VPRSSKQLYE DNEYALYTIT LFAKVVDNFK VRAREKGFQV RDFEYSPEAQ ESRKQEMEKL LLEQEVMRTS LLQWCYASYS EVFSSWMHFC
301: AVRIFVESIL RYGLPPSFLS AVLAPSTKGE KKVRSILEDL CGNVHSIYWK GEDDVAVAGL GGESEVHPYV SFTINFV

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.