Factsheet for Os05t0593100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 2
plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0770800-01
Os08t0468100-01
Os08t0468700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	Os02t0770800-01	AT1G77760.1	21798944
AT1G12840.1	Os08t0468100-01	AT1G77760.1	21798944
AT1G12840.1	Os08t0468700-00	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES20054	Sorghum	plastid	93.37	93.37
Zm00001d039157_P001	Maize	plastid	91.78	91.78
Zm00001d044665_P001	Maize	plastid	91.25	91.25
TraesCS1A01G440200.1	Wheat	cytosol	85.41	84.74
TraesCS1B01G475400.3	Wheat	golgi	85.41	84.74
TraesCS1D01G449200.3	Wheat	cytosol	85.41	84.74
KXG22879	Sorghum	plastid	92.31	84.47
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	84.88	81.22
VIT_17s0000g00460.t01	Wine grape	cytosol, plastid	78.51	78.93
VIT_14s0068g01280.t01	Wine grape	mitochondrion	77.98	78.4
GSMUA_Achr4P08840_001	Banana	cytosol	27.32	76.87
AT1G12840.1	Thale cress	cytosol	75.86	76.27
CDX98037	Canola	cytosol	75.86	76.27
Bra019792.1-P	Field mustard	cytosol	75.86	76.27
CDY19421	Canola	cytosol	76.13	76.13
CDY66539	Canola	cytosol	75.86	76.06
CDY21070	Canola	cytosol	75.86	76.06
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	75.6	75.8
CDX71966	Canola	cytosol	75.6	75.4
Solyc03g097800.2.1	Tomato	nucleus	16.98	73.56
GSMUA_AchrUn_...	Banana	cytosol	28.91	70.78
TraesCS1A01G282100.1	Wheat	cytosol	68.97	68.78
TraesCS1D01G281400.1	Wheat	cytosol	68.44	68.44
TraesCS1B01G291300.1	Wheat	cytosol	67.9	67.9
CDY16036	Canola	cytosol	75.86	60.34
Bra026951.1-P	Field mustard	cytosol	75.86	50.26
CDY26596	Canola	cytosol	75.86	46.58
KRH62549	Soybean	mitochondrion	16.71	45.65
CDY05652	Canola	cytosol	9.81	43.53

Protein Annotations

Gene3D:1.20.1460.10	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	EntrezGene:4339800	ProteinID:AAT44305.1
EMBL:AK061855	EMBL:AK100119	InterPro:ATPase_V1-cplx_csu	ProteinID:BAF18414.1	ProteinID:BAS95649.1	ncoils:Coil
ProteinID:EEE64903.1	GO:GO:0000221	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0008553	GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0016787
GO:GO:0033180	GO:GO:0046961	EnsemblPlantsGene:Os05g0593100	EnsemblPlants:Os05t0593100-01	PFAM:PF03223	PANTHER:PTHR10137
PANTHER:PTHR10137:SF0	UniProt:Q6L4R5	SUPFAM:SSF118203	UniParc:UPI00003A9295	InterPro:Vac_ATP_synth_c_sf	RefSeq:XP_015640544.1
SEG:seg	:	:	:	:	:

Description

Similar to Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C subunit) (Vacuolar proton pump C subunit). (Os05t0593100-01)

Coordinates

chr5:-:29547451..29551624

Molecular Weight (calculated)

42680.6 Da

IEP (calculated)

5.339

GRAVY (calculated)

-0.262

Length

377 amino acids

Sequence
(BLAST)

001: MATRYWIVSL PVQTPGSTAN SLWARLQDSI SRHSFDTPLY RFNVPDLRVG TLDSLLALSD DLVKSNVFIE GVSHKIRRQI EELERAGGVE SGALTVDGVP
101: VDTYLTRFVW DEGKYPTMSP LKEIVGSIQS QVSKIEDDMK VRGAEYNNVR SQLSAINRKQ TGSLAVRDLS NLVKPEDMVT SEHLVTLLAV VPKYSQKDWL
201: SSYESLDTFV VPRSSKKLYE DNEYALYTVT LFAKVVDNFK VRAREKGFQV RDFEYSSEAQ ESRKEELEKL MQDQEAMRAS LLQWCYASYS EVFSSWMHFC
301: AVRVFVESIL RYGLPPSFLS AVLAPSQKGE KKVRSILEEL CGNVHSIYWK SEDDVGVAGL GGETEAHPYV SFTINFI

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.