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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS4A01G376700.1
TraesCS6A01G017500.2
TraesCS6A01G326200.1
TraesCS6B01G024900.1
TraesCS6B01G356800.1
TraesCS6D01G020700.1
TraesCS6D01G306000.1
TraesCS7A01G078500.1
TraesCS7D01G073700.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12840.1 TraesCS4A01G376700.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS6A01G017500.2 AT1G77760.1 21798944
AT1G12840.1 TraesCS6A01G326200.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS6B01G024900.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS6B01G356800.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS6D01G020700.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS6D01G306000.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS7A01G078500.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS7D01G073700.1 AT1G77760.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G475400.3 Wheat golgi 99.47 99.47
TraesCS1A01G440200.1 Wheat cytosol 99.47 99.47
HORVU1Hr1G094800.2 Barley cytosol, endoplasmic reticulum, mitochondrion 98.68 95.18
EES20054 Sorghum plastid 86.05 86.74
Zm00001d039157_P001 Maize plastid 84.74 85.41
Os05t0593100-01 Rice plasma membrane 84.74 85.41
Zm00001d044665_P001 Maize plastid 83.68 84.35
KXG22879 Sorghum plastid 84.47 77.91
GSMUA_Achr4P08840_001 Banana cytosol 27.11 76.87
VIT_17s0000g00460.t01 Wine grape cytosol, plastid 74.74 75.73
VIT_14s0068g01280.t01 Wine grape mitochondrion 72.63 73.6
CDY21070 Canola cytosol 72.11 72.87
CDY66539 Canola cytosol 72.11 72.87
Bra019792.1-P Field mustard cytosol 71.84 72.8
CDX98037 Canola cytosol 71.84 72.8
CDY19421 Canola cytosol 72.11 72.68
Bra016752.1-P Field mustard cytosol, mitochondrion, plastid 71.84 72.61
AT1G12840.1 Thale cress cytosol 71.05 72.0
CDX71966 Canola cytosol 71.32 71.69
GSMUA_AchrUn_... Banana cytosol 28.95 71.43
Solyc03g097800.2.1 Tomato nucleus 16.32 71.26
TraesCS1D01G281400.1 Wheat cytosol 68.68 69.23
CDY16036 Canola cytosol 71.32 57.17
Bra026951.1-P Field mustard cytosol 71.58 47.8
CDY26596 Canola cytosol 71.58 44.3
CDY05652 Canola cytosol 9.74 43.53
KRH62549 Soybean mitochondrion 15.26 42.03
Protein Annotations
EnsemblPlants:TraesCS1D01G449200.3EnsemblPlantsGene:TraesCS1D01G449200Gene3D:1.20.1460.10Gene3D:3.30.70.100Gene3D:3.30.70.1180GO:GO:0003674
GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0015078GO:GO:0015991
GO:GO:0016020GO:GO:0033180InterPro:ATPase_V1-cplx_csuInterPro:Vac_ATP_synth_c_sfPANTHER:PTHR10137PANTHER:PTHR10137:SF0
PFAM:PF03223SEG:segSUPFAM:SSF118203TIGR:cd14785MapMan:24.1.1.2.3:
Description
No Description!
Coordinates
chr1D:+:491632411..491636270
Molecular Weight (calculated)
42866.9 Da
IEP (calculated)
5.518
GRAVY (calculated)
-0.258
Length
380 amino acids
Sequence
(BLAST)
001: MATRYWIAAL PVADDNVAAG KTALWARLQD AISRHSFDTP LYRFTVPDLR PGTLDSLLAL SDDLVKSNIF IEGVSHKIRR QIEDLERAGG VEPGTLTVDG
101: VPVDSYLTRF VWDEGKYPVN APLKETVASI QSQVAKIEDD MKVRVAEYGN VKSQLGTINR KQTGSLAVRD LSNLIKPEDM VTSEHLVTLL SIVPKYSQKD
201: WLSSYESLDT FVVPRSSKKL YEDNEYALYT VTLFAKVVDN FKVHAREKGF QIRDFEYSPE AQESRKQELE KLLQDQEVMR TSLLQWCYAS YSEVFSSWMH
301: FSAVRVFVES ILRYGLPARF LSVVLAPSTK SEKKVRNILE GLCGNANSSY WRSEDDVGMA AGLGGETESH PYVSFTINFV
Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)
001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA
Arabidopsis Description
VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.