Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G251400.1 | |
| TraesCS6B01G273900.1 | |
| TraesCS6D01G233200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G77760.1 | TraesCS6A01G251400.1 | AT3G48150.1 | 21798944 |
| AT1G77760.1 | TraesCS6B01G273900.1 | AT3G48150.1 | 21798944 |
| AT1G77760.1 | TraesCS6D01G233200.1 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G078500.1 | Wheat | cytosol | 94.83 | 95.38 |
| TraesCS4A01G376700.1 | Wheat | cytosol | 94.6 | 91.96 |
| TraesCS6D01G020700.1 | Wheat | cytosol, plastid | 87.03 | 82.93 |
| Os08t0468100-01 | Rice | plastid | 85.07 | 80.9 |
| EES13985 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 84.27 | 79.7 |
| Os08t0468700-00 | Rice | plastid | 83.7 | 79.59 |
| Zm00001d049995_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 61.31 | 79.11 |
| Zm00001d031769_P001 | Maize | mitochondrion | 62.46 | 79.07 |
| GSMUA_Achr9P15480_001 | Banana | cytosol | 62.46 | 72.44 |
| GSMUA_Achr8P23160_001 | Banana | mitochondrion | 56.6 | 72.08 |
| CDY68886 | Canola | cytosol, mitochondrion | 57.18 | 68.5 |
| TraesCS6D01G306000.1 | Wheat | cytosol, peroxisome, plastid | 69.0 | 67.15 |
| VIT_18s0001g03910.t01 | Wine grape | plastid | 70.03 | 67.11 |
| KRH18816 | Soybean | cytosol, mitochondrion, peroxisome | 68.2 | 67.04 |
| KRH53180 | Soybean | cytosol, mitochondrion, peroxisome | 68.08 | 66.63 |
| Solyc11g013810.1.1 | Tomato | cytosol, nucleus | 68.2 | 65.13 |
| PGSC0003DMT400077648 | Potato | cytosol | 68.08 | 65.09 |
| CDX68044 | Canola | plastid | 66.36 | 63.52 |
| Bra003670.1-P | Field mustard | plastid | 66.36 | 63.52 |
| Bra015656.1-P | Field mustard | cytosol | 64.75 | 63.37 |
| KRH16605 | Soybean | cytosol | 64.41 | 63.32 |
| CDX88386 | Canola | cytosol, plastid | 64.87 | 63.2 |
| Bra008333.1-P | Field mustard | plastid | 65.67 | 63.13 |
| CDX79234 | Canola | plastid | 66.02 | 63.12 |
| AT1G37130.1 | Thale cress | cytosol | 66.36 | 63.03 |
| KRH16606 | Soybean | cytosol | 62.92 | 62.77 |
| AT1G77760.1 | Thale cress | cytosol | 64.98 | 61.72 |
| CDX87505 | Canola | cytosol, mitochondrion, peroxisome, plastid | 19.75 | 61.65 |
| CDY26836 | Canola | cytosol | 38.46 | 60.14 |
| KRH18814 | Soybean | cytosol, mitochondrion, plastid | 31.57 | 60.04 |
| CDX87504 | Canola | cytosol | 34.67 | 58.41 |
| GSMUA_Achr3P07200_001 | Banana | cytosol | 70.38 | 54.49 |
| GSMUA_Achr5P05820_001 | Banana | mitochondrion, nucleus, peroxisome | 23.42 | 44.64 |
| GSMUA_Achr5P05830_001 | Banana | cytosol | 18.25 | 44.41 |
| TraesCS3D01G332300.1 | Wheat | unclear | 12.51 | 39.07 |
| TraesCS1D01G305400.1 | Wheat | endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 12.4 | 38.71 |
| TraesCS3D01G129500.1 | Wheat | mitochondrion | 12.28 | 34.63 |
Protein Annotations
Description
No Description!
Coordinates
chr7D:+:43212472..43217020
Molecular Weight (calculated)
97250.2 Da
IEP (calculated)
6.674
GRAVY (calculated)
-0.359
Length
871 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASVQLDEP ARTPRVEEEE EASDDEEEHE EWRELYGSQL QLEVEPPLHD ARDEGTADAW TERNPSLIRL TGKHPFNCEP PLARLMHHGF ITPAPLHYVR
101: NHGPVPRADW SSWTVEVSGL VSRAVRLTMD ELVRDFPAAE LPVTLVCAGN RRKEQNMVRQ TAGFNWGAAG VSTSVWRGAR LRDVLRRCGI MGLRKGRGAL
201: HVCFVGAEDL PGGGGGGAKY GTSVTREWAL DPSRDIMLAY AQNGEPLLPD HGFPVRVIIP GCIGGRMVKW LTRIVVTAAE SDNYYHFKDN RVLPSHVDAE
301: LADAQAWWYK PEYIINELNT NSVITTPGHD EILPINAFTT QRAYTMKGYA YAGGGKKIIR VEVTLDGGET WMLCTLDIPE KPNKYGRYWC WCFWSVDVEV
401: LDLLGAKEVA VRAWDQAQNT QPEKLIWNLM GMMNNCWFKV KVNVCRPHKR EIGLVFEHPT QPANQTGGWM ARQKHMETAA PGLKRSTSTP FIHTTDDKQF
501: TMSEVRKHGS KDSAWIVVHG HVYDCTAFLK DHPGGADSIL INAGTDCTEE FDAIHSDKAK ALLDAHRIGQ LITTGGGYTS DNSVHGGSSL APIREATKAT
601: AAPIALSSPR EKVRCRLVDK KELSRDVCLF RFALPSSDQV LGLPVGKHIF VCANIEGKLC MRPYTPTSMV DKVGQFELLV KVYFKNEHPK FPDGGVMTQY
701: LESLQVGSSY IDVKGPLGHV EYTGRGSFMI GGKPRRARRL AMICGGSGIT PMYQVIQAVL RDQPGDETEM HLVYANRTED DILLRDELDR WAAEHPDMLK
801: VWYVIDQVKR PEEGWKFSVG HVREDILRAH VPEGGDDTLA LACGPPPMIK FAISPNLEKM KYDMANSFIS F
101: NHGPVPRADW SSWTVEVSGL VSRAVRLTMD ELVRDFPAAE LPVTLVCAGN RRKEQNMVRQ TAGFNWGAAG VSTSVWRGAR LRDVLRRCGI MGLRKGRGAL
201: HVCFVGAEDL PGGGGGGAKY GTSVTREWAL DPSRDIMLAY AQNGEPLLPD HGFPVRVIIP GCIGGRMVKW LTRIVVTAAE SDNYYHFKDN RVLPSHVDAE
301: LADAQAWWYK PEYIINELNT NSVITTPGHD EILPINAFTT QRAYTMKGYA YAGGGKKIIR VEVTLDGGET WMLCTLDIPE KPNKYGRYWC WCFWSVDVEV
401: LDLLGAKEVA VRAWDQAQNT QPEKLIWNLM GMMNNCWFKV KVNVCRPHKR EIGLVFEHPT QPANQTGGWM ARQKHMETAA PGLKRSTSTP FIHTTDDKQF
501: TMSEVRKHGS KDSAWIVVHG HVYDCTAFLK DHPGGADSIL INAGTDCTEE FDAIHSDKAK ALLDAHRIGQ LITTGGGYTS DNSVHGGSSL APIREATKAT
601: AAPIALSSPR EKVRCRLVDK KELSRDVCLF RFALPSSDQV LGLPVGKHIF VCANIEGKLC MRPYTPTSMV DKVGQFELLV KVYFKNEHPK FPDGGVMTQY
701: LESLQVGSSY IDVKGPLGHV EYTGRGSFMI GGKPRRARRL AMICGGSGIT PMYQVIQAVL RDQPGDETEM HLVYANRTED DILLRDELDR WAAEHPDMLK
801: VWYVIDQVKR PEEGWKFSVG HVREDILRAH VPEGGDDTLA LACGPPPMIK FAISPNLEKM KYDMANSFIS F
001: MAASVDNRQY ARLEPGLNGV VRSYKPPVPG RSDSPKAHQN QTTNQTVFLK PAKVHDDDED VSSEDENETH NSNAVYYKEM IRKSNAELEP SVLDPRDEYT
101: ADSWIERNPS MVRLTGKHPF NSEAPLNRLM HHGFITPVPL HYVRNHGHVP KAQWAEWTVE VTGFVKRPMK FTMDQLVSEF AYREFAATLV CAGNRRKEQN
201: MVKKSKGFNW GSAGVSTSVW RGVPLCDVLR RCGIFSRKGG ALNVCFEGSE DLPGGAGTAG SKYGTSIKKE YAMDPSRDII LAYMQNGEYL TPDHGFPVRI
301: IIPGFIGGRM VKWLKRIIVT TKESDNFYHF KDNRVLPSLV DAELADEEGW WYKPEYIINE LNINSVITTP CHEEILPINA FTTQRPYTLK GYAYSGGGKK
401: VTRVEVTVDG GETWNVCALD HQEKPNKYGK FWCWCFWSLE VEVLDLLSAK EIAVRAWDET LNTQPEKMIW NLMGMMNNCW FRVKTNVCKP HKGEIGIVFE
501: HPTLPGNESG GWMAKERHLE KSADAPPSLK KSVSTPFMNT TAKMYSMSEV KKHNSADSCW IIVHGHIYDC TRFLMDHPGG SDSILINAGT DCTEEFEAIH
601: SDKAKKMLED YRIGELITTG YSSDSSSPNN SVHGSSAVFS LLAPIGEATP VRNLALVNPR AKVPVQLVEK TSISHDVRKF RFALPVEDMV LGLPVGKHIF
701: LCATINDKLC LRAYTPSSTV DVVGYFELVV KIYFGGVHPR FPNGGLMSQY LDSLPIGSTL EIKGPLGHVE YLGKGSFTVH GKPKFADKLA MLAGGTGITP
801: VYQIIQAILK DPEDETEMYV IYANRTEEDI LLREELDGWA EQYPDRLKVW YVVESAKEGW AYSTGFISEA IMREHIPDGL DGSALAMACG PPPMIQFAVQ
901: PNLEKMQYNI KEDFLIF
101: ADSWIERNPS MVRLTGKHPF NSEAPLNRLM HHGFITPVPL HYVRNHGHVP KAQWAEWTVE VTGFVKRPMK FTMDQLVSEF AYREFAATLV CAGNRRKEQN
201: MVKKSKGFNW GSAGVSTSVW RGVPLCDVLR RCGIFSRKGG ALNVCFEGSE DLPGGAGTAG SKYGTSIKKE YAMDPSRDII LAYMQNGEYL TPDHGFPVRI
301: IIPGFIGGRM VKWLKRIIVT TKESDNFYHF KDNRVLPSLV DAELADEEGW WYKPEYIINE LNINSVITTP CHEEILPINA FTTQRPYTLK GYAYSGGGKK
401: VTRVEVTVDG GETWNVCALD HQEKPNKYGK FWCWCFWSLE VEVLDLLSAK EIAVRAWDET LNTQPEKMIW NLMGMMNNCW FRVKTNVCKP HKGEIGIVFE
501: HPTLPGNESG GWMAKERHLE KSADAPPSLK KSVSTPFMNT TAKMYSMSEV KKHNSADSCW IIVHGHIYDC TRFLMDHPGG SDSILINAGT DCTEEFEAIH
601: SDKAKKMLED YRIGELITTG YSSDSSSPNN SVHGSSAVFS LLAPIGEATP VRNLALVNPR AKVPVQLVEK TSISHDVRKF RFALPVEDMV LGLPVGKHIF
701: LCATINDKLC LRAYTPSSTV DVVGYFELVV KIYFGGVHPR FPNGGLMSQY LDSLPIGSTL EIKGPLGHVE YLGKGSFTVH GKPKFADKLA MLAGGTGITP
801: VYQIIQAILK DPEDETEMYV IYANRTEEDI LLREELDGWA EQYPDRLKVW YVVESAKEGW AYSTGFISEA IMREHIPDGL DGSALAMACG PPPMIQFAVQ
901: PNLEKMQYNI KEDFLIF
Arabidopsis Description
NIA2Nitrate reductase [NADH] 2 [Source:UniProtKB/Swiss-Prot;Acc:P11035]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.