Factsheet for VIT_18s0001g03910.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77760.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT1G77760.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077648	Potato	cytosol	80.86	80.68
Solyc11g013810.1.1	Tomato	cytosol, nucleus	80.75	80.48
CDY68886	Canola	cytosol, mitochondrion	64.25	80.33
KRH18816	Soybean	cytosol, mitochondrion, peroxisome	78.0	80.02
KRH53180	Soybean	cytosol, mitochondrion, peroxisome	77.34	78.99
AT1G37130.1	Thale cress	cytosol	78.33	77.64
Bra008333.1-P	Field mustard	plastid	76.24	76.49
Bra003670.1-P	Field mustard	plastid	76.13	76.04
Bra015656.1-P	Field mustard	cytosol	74.37	75.96
CDX68044	Canola	plastid	76.02	75.93
CDX79234	Canola	plastid	76.02	75.85
CDX88386	Canola	cytosol, plastid	74.26	75.5
AT1G77760.1	Thale cress	cytosol	76.13	75.46
GSMUA_Achr9P15480_001	Banana	cytosol	61.72	74.7
KRH16605	Soybean	cytosol	72.61	74.49
GSMUA_Achr8P23160_001	Banana	mitochondrion	54.68	72.66
EES13985	Sorghum	cytosol, mitochondrion, peroxisome, plastid	73.16	72.2
Zm00001d049995_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	53.58	72.15
CDX87505	Canola	cytosol, mitochondrion, peroxisome, plastid	22.11	72.04
CDY26836	Canola	cytosol	44.11	71.99
Os08t0468100-01	Rice	plastid	72.39	71.83
KRH16606	Soybean	cytosol	68.65	71.48
Zm00001d031769_P001	Maize	mitochondrion	53.8	71.08
Os08t0468700-00	Rice	plastid	71.51	70.96
TraesCS7A01G078500.1	Wheat	cytosol	67.11	70.44
TraesCS6A01G017500.2	Wheat	cytosol, plastid	70.74	70.35
TraesCS6D01G020700.1	Wheat	cytosol, plastid	70.74	70.35
TraesCS6B01G024900.1	Wheat	cytosol, plastid	70.63	70.24
TraesCS7D01G073700.1	Wheat	cytosol, nucleus, peroxisome	67.11	70.03
KRH18814	Soybean	cytosol, mitochondrion, plastid	34.76	69.0
Os02t0770800-01	Rice	cytosol	67.0	68.5
TraesCS4A01G376700.1	Wheat	cytosol	67.44	68.42
Zm00001d052139_P001	Maize	cytosol, mitochondrion, peroxisome	48.73	68.36
EES07601	Sorghum	cytosol, mitochondrion, peroxisome	66.56	67.83
TraesCS6D01G306000.1	Wheat	cytosol, peroxisome, plastid	66.78	67.82
HORVU6Hr1G003300.1	Barley	mitochondrion	70.74	67.61
Zm00001d018206_P001	Maize	peroxisome	49.06	67.58
TraesCS6A01G326200.1	Wheat	plastid	66.34	67.07
TraesCS6B01G356800.1	Wheat	cytosol, peroxisome, plastid	66.12	67.0
Zm00001d017025_P001	Maize	cytosol	62.71	64.04
OQU85223	Sorghum	cytosol	62.82	61.86
GSMUA_Achr3P07200_001	Banana	cytosol	69.97	56.53
GSMUA_Achr5P05820_001	Banana	mitochondrion, nucleus, peroxisome	23.32	46.39
GSMUA_Achr5P05830_001	Banana	cytosol	17.27	43.85
VIT_13s0047g01190.t01	Wine grape	mitochondrion	12.54	39.04
VIT_06s0009g01710.t01	Wine grape	endoplasmic reticulum	11.55	37.77
VIT_08s0056g01150.t01	Wine grape	endoplasmic reticulum	11.22	36.82
VIT_11s0016g04970.t01	Wine grape	mitochondrion	11.99	33.44

Protein Annotations

EntrezGene:100264320	wikigene:100264320	Gene3D:2.40.30.10	Gene3D:2.60.40.650	MapMan:25.1.4.1	Gene3D:3.10.120.10
Gene3D:3.40.50.80	Gene3D:3.90.420.10	ProteinID:AEO72337	ProteinID:AEO72337.1	ProteinID:CCB45522	ProteinID:CCB45522.1
InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	UniProt:F6H0M5	EMBL:FN595227	InterPro:Fd_Rdtase_FAD-bd
InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006809	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009703	GO:GO:0009987	GO:GO:0016491	GO:GO:0020037	GO:GO:0030151
GO:GO:0042128	GO:GO:0043546	GO:GO:0046872	GO:GO:0050464	GO:GO:0055114	InterPro:IPR001199
InterPro:IPR017927	InterPro:IPR036374	InterPro:IPR036400	InterPro:Ig_E-set	EMBL:JF796047	EntrezGene:LOC100264320
wikigene:LOC100264320	InterPro:MoCF_OxRdtse_dimer	InterPro:Mopterin_OxRdtase_euk	InterPro:NADH-Cyt_B5_reductase	InterPro:Nitr_rd_NADH	InterPro:OxRdtase_FAD-bd_dom
InterPro:OxRdtase_FAD/NAD-bd	InterPro:OxRdtase_Mopterin-bd_dom	InterPro:OxRdtase_Mopterin-bd_sf	InterPro:OxRdtase_Mopterin_BS	PFAM:PF00173	PFAM:PF00174
PFAM:PF00175	PFAM:PF00970	PFAM:PF03404	PIRSF:PIRSF000233	PRINTS:PR00363	PRINTS:PR00371
PRINTS:PR00406	PRINTS:PR00407	ScanProsite:PS00191	ScanProsite:PS00559	PFscan:PS50255	PFscan:PS51384
PANTHER:PTHR19370	PANTHER:PTHR19370:SF182	InterPro:Riboflavin_synthase-like_b-brl	SMART:SM01117	SUPFAM:SSF52343	SUPFAM:SSF55856
SUPFAM:SSF56524	SUPFAM:SSF63380	SUPFAM:SSF81296	TIGR:TC68051	UniParc:UPI00019854B3	ArrayExpress:VIT_18s0001g03910
EnsemblPlantsGene:VIT_18s0001g03910	EnsemblPlants:VIT_18s0001g03910.t01	unigene:Vvi.9741	SEG:seg	:	:

Description

Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:F6H0M5]

Coordinates

chr18:-:3577992..3582255

Molecular Weight (calculated)

101854.0 Da

IEP (calculated)

7.727

GRAVY (calculated)

-0.393

Length

909 amino acids

Sequence
(BLAST)

001: MAASVDNRQF SRLESSLNGV VRSFKTGSNH RSDSPVRGGG CNFPSNSEFT RPKKSVAAVE DDSSSDDENE PDWKDLVRKG NSELEPSVLD SRDEGTADNW
101: IQRNPSMVRL TGKHPFNSEA PLNRLMHHGF ITPVPLHYVR NHGAVPKGSW DNWTVEVSGL VKRPARFTMD QLVNEFPTRE FPVTLVCAGN RRKEQNMVKQ
201: TIGFNWGAAG VSTSVWRGVR LRDVLKRCGI MSRKQGGLNV CFEGAEDLPG GGGSKYGTSI KNEIAMDPSR DIILAYMQNG ERLLPDHGFP VRMIIPGFIG
301: GRMVKWLKRI IVTTQESDSY YHYKDNRVLP SHVDAELANA EAWWYKPEYI INELNINSVI TTPCHEEILP INSWTTQRPY TLKGYAYSGG GKKVTRVEVT
401: MDGGETWQVC RLDHPEKPNK YGKYWCWCFW SLEVEVLDLI GAKEIAVRAW DETLNTQPEK LIWNVMGMMN NCWFRVKTNV CKRHRGEIGI VFEHPTLPGN
501: QSGGWMAREK HLVQSSDANS TLKKSVSSPF MNTSSKMYSM SEVKKHNSAD STWIVVHGHV YDCTRFLKDH PGGTDSILIN AGTDCTEEFD AIHSDKAKKL
601: LEDYRIGELM TTGYTSDSSA SSPNTSVHGA SNLTHLAPIK EVTPLRSVAL VPREKIPCKL VSKDSISHDV RRFRFALPSE DQVLGLPVGK HIFLCAAIDG
701: KLCMRAYTPT SNIDEVGFFE LVVKIYFKGV HPKFPNGGLM SQYLDSLPLG ATLDVKGPLG HIEYTGRGNF LVHGKPKFAK KLAMIAGGSG ITPIYQIIQA
801: VLKDPEDDTE MYVVYANRTE DDILLWEELD AWAEKHERLK VWYVVGESIR KGWKYSLGFI TESILREHIP SASGDTLALA CGPPPMIQFA VQPNLEKLGY
901: DIKNSLLVF

Best Arabidopsis Sequence Match ( AT1G37130.1 )
(BLAST)

001: MAASVDNRQY ARLEPGLNGV VRSYKPPVPG RSDSPKAHQN QTTNQTVFLK PAKVHDDDED VSSEDENETH NSNAVYYKEM IRKSNAELEP SVLDPRDEYT
101: ADSWIERNPS MVRLTGKHPF NSEAPLNRLM HHGFITPVPL HYVRNHGHVP KAQWAEWTVE VTGFVKRPMK FTMDQLVSEF AYREFAATLV CAGNRRKEQN
201: MVKKSKGFNW GSAGVSTSVW RGVPLCDVLR RCGIFSRKGG ALNVCFEGSE DLPGGAGTAG SKYGTSIKKE YAMDPSRDII LAYMQNGEYL TPDHGFPVRI
301: IIPGFIGGRM VKWLKRIIVT TKESDNFYHF KDNRVLPSLV DAELADEEGW WYKPEYIINE LNINSVITTP CHEEILPINA FTTQRPYTLK GYAYSGGGKK
401: VTRVEVTVDG GETWNVCALD HQEKPNKYGK FWCWCFWSLE VEVLDLLSAK EIAVRAWDET LNTQPEKMIW NLMGMMNNCW FRVKTNVCKP HKGEIGIVFE
501: HPTLPGNESG GWMAKERHLE KSADAPPSLK KSVSTPFMNT TAKMYSMSEV KKHNSADSCW IIVHGHIYDC TRFLMDHPGG SDSILINAGT DCTEEFEAIH
601: SDKAKKMLED YRIGELITTG YSSDSSSPNN SVHGSSAVFS LLAPIGEATP VRNLALVNPR AKVPVQLVEK TSISHDVRKF RFALPVEDMV LGLPVGKHIF
701: LCATINDKLC LRAYTPSSTV DVVGYFELVV KIYFGGVHPR FPNGGLMSQY LDSLPIGSTL EIKGPLGHVE YLGKGSFTVH GKPKFADKLA MLAGGTGITP
801: VYQIIQAILK DPEDETEMYV IYANRTEEDI LLREELDGWA EQYPDRLKVW YVVESAKEGW AYSTGFISEA IMREHIPDGL DGSALAMACG PPPMIQFAVQ
901: PNLEKMQYNI KEDFLIF

Arabidopsis Description

NIA2Nitrate reductase [NADH] 2 [Source:UniProtKB/Swiss-Prot;Acc:P11035]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.