Factsheet for VIT_06s0009g01710.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
mitochondrion 2
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
BaCelLo:	cytosol
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89948	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.01	81.43
KRG89951	Soybean	mitochondrion	38.49	77.54
VIT_08s0056g01150.t01	Wine grape	endoplasmic reticulum	75.54	75.81
VIT_13s0047g01190.t01	Wine grape	mitochondrion	69.78	66.44
VIT_11s0016g04970.t01	Wine grape	mitochondrion	42.81	36.5
VIT_18s0001g03910.t01	Wine grape	plastid	37.77	11.55

Protein Annotations

EntrezGene:100247986	wikigene:100247986	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	ProteinID:CBI24351
ProteinID:CBI24351.3	UniProt:D7T1H1	EMBL:FN595504	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0004128	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0022900	GO:GO:0055114
InterPro:IPR017927	EntrezGene:LOC100247986	wikigene:LOC100247986	InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd
PFAM:PF00175	PFAM:PF00970	PRINTS:PR00371	PRINTS:PR00406	PFscan:PS51384	PANTHER:PTHR19370
PANTHER:PTHR19370:SF97	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	TIGR:TC52408	TMHMM:TMhelix
UniParc:UPI00015CA128	ArrayExpress:VIT_06s0009g01710	EnsemblPlantsGene:VIT_06s0009g01710	EnsemblPlants:VIT_06s0009g01710.t01	unigene:Vvi.14702	RefSeq:XP_002273225
RefSeq:XP_002273225.1	SEG:seg	:	:	:	:

Description

NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:D7T1H1]

Coordinates

chr6:+:13684790..13698878

Molecular Weight (calculated)

31004.8 Da

IEP (calculated)

8.441

GRAVY (calculated)

-0.127

Length

278 amino acids

Sequence
(BLAST)

001: MELLHSHRVE VLSIAVALAA IGAGTAYYFY FIKKPKGCLD PENFKEFKLI KRTQLSHNVA KFIFALPTPT SVLGLPIGQH MSCKGKDSLG EDVVKPYTPT
101: TLDSDLGYFE LVIKMYPQGR MSHHFREMCE GDYLAVKGPK GRFKYQPGQV IAFGMLAGGT GITPMFQVTR AILENPSDNT KVHLIYANVT YEDILLKEEL
201: DNFAANFPNR FTVYYVLNQP PEGWNGGVGF VSKEMIQTHC PPPATNIQIL RCGPPPMNKA MAGHLEALGY TSQMQFKF

Best Arabidopsis Sequence Match ( AT5G17770.1 )
(BLAST)

001: MDTEFLRTLD RQILLGVFVA FVAVGAGAAY FLTSSKKRRV CLDPENFKEF KLVKRHQLSH NVAKFVFELP TSTSVLGLPI GQHISCRGKD GQGEDVIKPY
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F

Arabidopsis Description

CBR1NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178US77]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.