Factsheet for VIT_11s0016g04970.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20080.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56619	Soybean	mitochondrion	76.07	76.78
KRH03716	Soybean	mitochondrion	74.54	76.18
Solyc05g018520.2.1	Tomato	plastid	74.23	74.92
TraesCS3A01G128600.1	Wheat	mitochondrion	70.55	74.19
TraesCS3B01G147600.1	Wheat	mitochondrion, unclear	70.25	74.11
TraesCS3D01G129500.1	Wheat	mitochondrion	70.25	74.11
AT5G20080.1	Thale cress	mitochondrion	74.54	74.09
Os01t0174300-01	Rice	mitochondrion	69.94	73.31
EES00217	Sorghum	mitochondrion	69.63	72.99
HORVU3Hr1G024170.3	Barley	mitochondrion	69.63	72.99
Zm00001d039656_P003	Maize	mitochondrion	68.71	72.03
GSMUA_Achr10P...	Banana	mitochondrion	72.09	71.0
VIT_13s0047g01190.t01	Wine grape	mitochondrion	39.88	44.52
VIT_08s0056g01150.t01	Wine grape	endoplasmic reticulum	37.12	43.68
VIT_06s0009g01710.t01	Wine grape	endoplasmic reticulum	36.5	42.81
VIT_18s0001g03910.t01	Wine grape	plastid	33.44	11.99

Protein Annotations

EntrezGene:100254338	wikigene:100254338	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	EMBL:AM459740
ProteinID:CAN63505	ProteinID:CAN63505.1	ProteinID:CBI28170	ProteinID:CBI28170.3	UniProt:D7TBY5	EMBL:FN595756
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004128	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005794	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505
GO:GO:0009628	GO:GO:0009651	GO:GO:0016491	GO:GO:0030312	GO:GO:0055114	InterPro:IPR017927
EntrezGene:LOC100254338	wikigene:LOC100254338	InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175
PFAM:PF00970	PRINTS:PR00371	PRINTS:PR00406	PFscan:PS51384	PANTHER:PTHR19370	PANTHER:PTHR19370:SF174
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	TIGR:TC52128	UniParc:UPI00015C8B5D	ArrayExpress:VIT_11s0016g04970
EnsemblPlantsGene:VIT_11s0016g04970	EnsemblPlants:VIT_11s0016g04970.t01	unigene:Vvi.14173	RefSeq:XP_002285073	RefSeq:XP_002285073.1	SEG:seg

Description

NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:D7TBY5]

Coordinates

chr11:+:4286562..4295477

Molecular Weight (calculated)

35856.5 Da

IEP (calculated)

9.116

GRAVY (calculated)

-0.206

Length

326 amino acids

Sequence
(BLAST)

001: MALFFKRLAK ASPVAFTNAF GGQPKSGARN FRIPFGAIAA VSGGISYYCF SSENLVHLDQ INENAGPKVA LNPDKWLEFK LQDTASVSHN TQLFRFSFDP
101: TAKLGLDIAS CILTRAPIGQ DDEGKIKYVI RPYTPISDPD SKGYFDLLIK VYPEGKMSQH FSHLKPGDII EVKGPIEKLR YTPNMKKQIG MIAGGTGITP
201: MLQIIEAILK NPDDKTQVSL IYANVSPDDI LLKKKLDMLA ATHPNLKIFY TVDNPSNNWR GGTGYISKDM VVKGLPAPSD DSLILVCGPP GMMKHISGNK
301: AKDYSQGELT GILKELGYTE DMVYKF

Best Arabidopsis Sequence Match ( AT5G20080.1 )
(BLAST)

001: MATSFFRRLA RSAPITFPVA FGSQSKSGSG AFRFSTGAIA ALSGGFSYYY LTSGNNLVYL DQAKEETGPK TALNPDKWLE FKLQDTARVS HNTQLFRFSF
101: DPSAELGLHV ASCLLTRAPL GYNAEGKTKY VIRPYTPISD PEAKGYFDLL IKVYPDGKMS QHFASLKPGD VLEVKGPVEK FKYSPNMKKH IGMIAGGSGI
201: TPMLQVIDAI VKNPEDNTQI SLLYANVSPD DILLKQKLDV LQANHPNLKI FYTVDNPTKN WKGGVGYISK DMALKGLPLP TDDTLILVCG PPGMMEHISG
301: GKAPDWSQGE VKGILKELGY TEEMVFKF

Arabidopsis Description

CBR2NADH-cytochrome b5 reductase-like protein [Source:UniProtKB/Swiss-Prot;Acc:P83291]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.