Factsheet for Zm00001d039656_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

extracellular: 20408568
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013757_P010
Zm00001d033159_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20080.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT5G20080.1	Zm00001d033159_P001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00217	Sorghum	mitochondrion	95.18	95.18
Os01t0174300-01	Rice	mitochondrion	90.68	90.68
TraesCS3B01G147600.1	Wheat	mitochondrion, unclear	86.82	87.38
HORVU3Hr1G024170.3	Barley	mitochondrion	87.14	87.14
TraesCS3A01G128600.1	Wheat	mitochondrion	86.82	87.1
TraesCS3D01G129500.1	Wheat	mitochondrion	86.5	87.06
GSMUA_Achr10P...	Banana	mitochondrion	78.14	73.41
VIT_11s0016g04970.t01	Wine grape	mitochondrion	72.03	68.71
KRH56619	Soybean	mitochondrion	70.1	67.49
KRH03716	Soybean	mitochondrion	68.81	67.08
Solyc05g018520.2.1	Tomato	plastid	67.85	65.33
AT5G20080.1	Thale cress	mitochondrion	68.81	65.24
Zm00001d043098_P002	Maize	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	40.84	41.5
Zm00001d038529_P003	Maize	plasma membrane	40.51	40.78
Zm00001d017490_P001	Maize	mitochondrion	11.58	34.95
Zm00001d017025_P001	Maize	cytosol	34.08	11.91
Zm00001d031769_P001	Maize	mitochondrion	21.86	9.88
Zm00001d052139_P001	Maize	cytosol, mitochondrion, peroxisome	19.29	9.26
Zm00001d018206_P001	Maize	peroxisome	19.61	9.24
Zm00001d049995_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	17.36	8.0

Protein Annotations

EntrezGene:103649684	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	UniProt:B6TCK3	EMBL:EU962718
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004128	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005794	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505
GO:GO:0009628	GO:GO:0009651	GO:GO:0016491	GO:GO:0030312	GO:GO:0055114	InterPro:IPR017927
InterPro:NADH-Cyt_B5_reductase	ProteinID:ONM29601.1	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970
PRINTS:PR00371	PRINTS:PR00406	PFscan:PS51257	PFscan:PS51384	PANTHER:PTHR19370	PANTHER:PTHR19370:SF174
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI000182C150	EnsemblPlantsGene:Zm00001d039656	EnsemblPlants:Zm00001d039656_P003
EnsemblPlants:Zm00001d039656_T003	SEG:seg	:	:	:	:

Description

NADH-cytochrome b5 reductase-like protein

Coordinates

chr3:+:10861854..10866922

Molecular Weight (calculated)

33846.9 Da

IEP (calculated)

9.332

GRAVY (calculated)

-0.196

Length

311 amino acids

Sequence
(BLAST)

001: MAALLLRRLA GTHRGRVPLG AAAAAACGGA TLFYASSSPT VAHLEETGKA AEQVALNPDK WLEFKLQEKA TVSHNSQLFR FSFDPSTKLG LDVASCLITR
101: APIGEEAEGR RKYVIRPYTP ISDPDSKGYF DLLIKVYPDG KMSQYFASLK PGDVVEVKGP IEKLRYNPNM KKQIGMIAGG SGITPMLQVV RAILKNPNDN
201: TQVSLIYANV SPDDILLKRE LDRLASSYPN FKVFYTVDKP STDWRGGVGF VSKDMVLKGL PGPAEDSLIL VCGPPGMMNH ISGDKAKDRS QGELSGVLKD
301: LGYTAEMVYK F

Best Arabidopsis Sequence Match ( AT5G20080.1 )
(BLAST)

001: MATSFFRRLA RSAPITFPVA FGSQSKSGSG AFRFSTGAIA ALSGGFSYYY LTSGNNLVYL DQAKEETGPK TALNPDKWLE FKLQDTARVS HNTQLFRFSF
101: DPSAELGLHV ASCLLTRAPL GYNAEGKTKY VIRPYTPISD PEAKGYFDLL IKVYPDGKMS QHFASLKPGD VLEVKGPVEK FKYSPNMKKH IGMIAGGSGI
201: TPMLQVIDAI VKNPEDNTQI SLLYANVSPD DILLKQKLDV LQANHPNLKI FYTVDNPTKN WKGGVGYISK DMALKGLPLP TDDTLILVCG PPGMMEHISG
301: GKAPDWSQGE VKGILKELGY TEEMVFKF

Arabidopsis Description

CBR2NADH-cytochrome b5 reductase-like protein [Source:UniProtKB/Swiss-Prot;Acc:P83291]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.