Factsheet for GSMUA_Achr10P20890_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P09250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20080.1	GSMUA_Achr9P09250_001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00217	Sorghum	mitochondrion	74.32	79.1
Os01t0174300-01	Rice	mitochondrion	74.02	78.78
Zm00001d039656_P003	Maize	mitochondrion	73.41	78.14
HORVU3Hr1G024170.3	Barley	mitochondrion	72.21	76.85
TraesCS3D01G129500.1	Wheat	mitochondrion	71.6	76.7
TraesCS3B01G147600.1	Wheat	mitochondrion, unclear	71.3	76.38
TraesCS3A01G128600.1	Wheat	mitochondrion	71.3	76.13
VIT_11s0016g04970.t01	Wine grape	mitochondrion	71.0	72.09
KRH03716	Soybean	mitochondrion	67.98	70.53
KRH56619	Soybean	mitochondrion	67.98	69.66
AT5G20080.1	Thale cress	mitochondrion	67.07	67.68
Solyc05g018520.2.1	Tomato	plastid	65.26	66.87
GSMUA_Achr8P21540_001	Banana	endoplasmic reticulum	36.25	43.32
GSMUA_Achr5P05820_001	Banana	mitochondrion, nucleus, peroxisome	22.96	16.63
GSMUA_Achr5P05830_001	Banana	cytosol	17.82	16.48
GSMUA_Achr8P23160_001	Banana	mitochondrion	29.91	14.47
GSMUA_Achr3P07200_001	Banana	cytosol	31.72	9.33
GSMUA_Achr9P15480_001	Banana	cytosol	18.43	8.12

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0004128	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005794	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009628	GO:GO:0009651	GO:GO:0016491
GO:GO:0030312	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr10G20890_001	EnsemblPlants:GSMUA_Achr10P20890_001	EnsemblPlants:GSMUA_Achr10T20890_001	InterPro:IPR017927
UniProt:M0RK14	InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970
PRINTS:PR00371	PRINTS:PR00406	PFscan:PS51384	PANTHER:PTHR19370	PANTHER:PTHR19370:SF174	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI0002949A39	SEG:seg	:	:

Description

NADH-cytochrome b5 reductase-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G20890_001]

Coordinates

chr10:+:26747599..26755586

Molecular Weight (calculated)

36435.9 Da

IEP (calculated)

9.077

GRAVY (calculated)

-0.233

Length

331 amino acids

Sequence
(BLAST)

001: MSLLLRRLSS HVSFSSLSSP GRLSSAFPDA INGHRRFPFG AAAALSAGVA VYYYSSSPTV AQLDPKIDES IIKVALDPEK WLEFKLQETA RVSHNTQLFR
101: FSFDPTAKLG LDVASCILTR APVGEESEGR RKYVIRPYTP ISDPDSKGYF DLLIKVYPDG QMSQHFATLQ PGDVVEVKGP IEKLRYSPNM KKNIGMIAGG
201: TGITPMLQVI KAILKNPDDN TQVSLIYANI SPDDILLKGE LDRLSTSYPN FKVFYTVDKP SKTWRGGTGY VSKDMVLKGL PSPGEETLIL VCGPPGMMKH
301: ISGDKAKDRS QGELTGILKE LGYSEEMVYK F

Best Arabidopsis Sequence Match ( AT5G20080.1 )
(BLAST)

001: MATSFFRRLA RSAPITFPVA FGSQSKSGSG AFRFSTGAIA ALSGGFSYYY LTSGNNLVYL DQAKEETGPK TALNPDKWLE FKLQDTARVS HNTQLFRFSF
101: DPSAELGLHV ASCLLTRAPL GYNAEGKTKY VIRPYTPISD PEAKGYFDLL IKVYPDGKMS QHFASLKPGD VLEVKGPVEK FKYSPNMKKH IGMIAGGSGI
201: TPMLQVIDAI VKNPEDNTQI SLLYANVSPD DILLKQKLDV LQANHPNLKI FYTVDNPTKN WKGGVGYISK DMALKGLPLP TDDTLILVCG PPGMMEHISG
301: GKAPDWSQGE VKGILKELGY TEEMVFKF

Arabidopsis Description

CBR2NADH-cytochrome b5 reductase-like protein [Source:UniProtKB/Swiss-Prot;Acc:P83291]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.