Factsheet for GSMUA_Achr5P05820_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus

Predictor Summary:

plastid 3
peroxisome 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77760.1	GSMUA_Achr11P...	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87505	Canola	cytosol, mitochondrion, peroxisome, plastid	26.91	44.09
GSMUA_Achr8P21540_001	Banana	endoplasmic reticulum	16.41	27.08
TraesCS6D01G020700.1	Wheat	cytosol, plastid	49.67	24.84
TraesCS6B01G024900.1	Wheat	cytosol, plastid	49.23	24.62
TraesCS6A01G017500.2	Wheat	cytosol, plastid	49.23	24.62
Os08t0468100-01	Rice	plastid	47.92	23.91
GSMUA_Achr3P07200_001	Banana	cytosol	58.64	23.82
EES13985	Sorghum	cytosol, mitochondrion, peroxisome, plastid	47.92	23.78
HORVU6Hr1G003300.1	Barley	mitochondrion	49.45	23.76
Os08t0468700-00	Rice	plastid	47.48	23.69
Solyc11g013810.1.1	Tomato	cytosol, nucleus	46.83	23.46
TraesCS7D01G073700.1	Wheat	cytosol, nucleus, peroxisome	44.64	23.42
PGSC0003DMT400077648	Potato	cytosol	46.61	23.38
TraesCS4A01G376700.1	Wheat	cytosol	45.73	23.33
VIT_18s0001g03910.t01	Wine grape	plastid	46.39	23.32
TraesCS7A01G078500.1	Wheat	cytosol	43.76	23.09
KRH18816	Soybean	cytosol, mitochondrion, peroxisome	44.64	23.02
GSMUA_Achr10P...	Banana	mitochondrion	16.63	22.96
Zm00001d017025_P001	Maize	cytosol	44.2	22.7
KRH53180	Soybean	cytosol, mitochondrion, peroxisome	43.98	22.58
KRH18814	Soybean	cytosol, mitochondrion, plastid	22.54	22.49
EES07601	Sorghum	cytosol, mitochondrion, peroxisome	43.54	22.31
CDY26836	Canola	cytosol	26.91	22.08
OQU85223	Sorghum	cytosol	44.42	21.99
TraesCS6B01G356800.1	Wheat	cytosol, peroxisome, plastid	43.11	21.96
Os02t0770800-01	Rice	cytosol	42.67	21.93
TraesCS6A01G326200.1	Wheat	plastid	43.11	21.91
KRH16605	Soybean	cytosol	42.45	21.9
TraesCS6D01G306000.1	Wheat	cytosol, peroxisome, plastid	42.67	21.79
GSMUA_Achr8P23160_001	Banana	mitochondrion	32.6	21.78
CDX88386	Canola	cytosol, plastid	42.01	21.48
KRH16606	Soybean	cytosol	40.48	21.19
CDX79234	Canola	plastid	42.23	21.19
Bra015656.1-P	Field mustard	cytosol	41.14	21.12
Bra003670.1-P	Field mustard	plastid	42.01	21.1
Bra008333.1-P	Field mustard	plastid	41.79	21.08
CDX68044	Canola	plastid	41.58	20.88
AT1G37130.1	Thale cress	cytosol	41.79	20.83
GSMUA_Achr5P05830_001	Banana	cytosol	16.19	20.67
AT1G77760.1	Thale cress	cytosol	40.92	20.39
GSMUA_Achr9P15480_001	Banana	cytosol	30.85	18.77
CDY68886	Canola	cytosol, mitochondrion	28.88	18.16
Zm00001d031769_P001	Maize	mitochondrion	26.48	17.59
Zm00001d018206_P001	Maize	peroxisome	24.07	16.67
Zm00001d052139_P001	Maize	cytosol, mitochondrion, peroxisome	23.19	16.36
Zm00001d049995_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	23.85	16.15
CDX87504	Canola	cytosol	17.51	15.47

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.80	Gene3D:3.90.420.10	MapMan:50.1.7	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0042128	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G05820_001	EnsemblPlants:GSMUA_Achr5P05820_001	EnsemblPlants:GSMUA_Achr5T05820_001	InterPro:IPR017927
InterPro:IPR036374	UniProt:M0SW11	InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	InterPro:OxRdtase_Mopterin-bd_sf
PFAM:PF00175	PFAM:PF00970	PRINTS:PR00371	PRINTS:PR00406	PFscan:PS51384	PANTHER:PTHR19370
PANTHER:PTHR19370:SF182	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF56524	SUPFAM:SSF63380	UniParc:UPI000296E391
SEG:seg	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G05820_001]

Coordinates

chr5:+:4329860..4331460

Molecular Weight (calculated)

50569.6 Da

IEP (calculated)

8.051

GRAVY (calculated)

-0.249

Length

457 amino acids

Sequence
(BLAST)

001: MDVHLSVLHD LNSIKRRRCT SLSAQPFSIP LTFTLSDTGY AKRGAPCTPP FHTLVYFFPV HPKSFNRSWR LLSATGSSAA SSRAAAASVG NRQCIRSPST
101: GLVAPAPAVG KTSGNYQLSD SSVRGCGFPS LVPAKEKDQR YGDDDDCDEE EEVLDWTAEY GGSHLEVEPS IHDPRDESTA DRWIERNPSL IRLTGKHPFN
201: CEPPLARLMH HGFVTPVPLH SNTSPISPLC GRHTFTFTLN QQLFIIPCTT TCIIEISRSP ALMNPGKRRV QCNLVAKKTV SHDVRLFRFA LPSADQVLGL
301: PVGKHIFLCA TIDGKLCMRP YTPTSPVDEI GHFELLINVY FKGENPKFPN GGLMSQHLES LPIGSTLDVK GPLGHIEYAG RGNFLVDGKH RSTRRLAMIA
401: GGTGITPVYQ VIQAVLRDPE NRTEMHLVYA NRSEDDILLR DELDILLQKS YFLLAFR

Best Arabidopsis Sequence Match ( AT1G77760.1 )
(BLAST)

001: MATSVDNRHY PTMNGVAHAF KPPLVPSPRS FDRHRHQNQT LDVILTETKI VKETEVITTV VDSYDDSSSD DEDESHNRNV PYYKELVKKS NSDLEPSILD
101: PRDESTADSW IQRNSSMLRL TGKHPFNAEA PLPRLMHHGF ITPVPLHYVR NHGAVPKANW SDWSIEITGL VKRPAKFTME ELISEFPSRE FPVTLVCAGN
201: RRKEQNMVKQ TIGFNWGSAG VSTSLWKGIP LSEILRRCGI YSRRGGALNV CFEGAEDLPG GGGSKYGTSI KKEMAMDPAR DIILAYMQNG ELLTPDHGFP
301: VRVIVPGFIG GRMVKWLKRI IVTPQESDSY YHYKDNRVLP SLVDAELANS EAWWYKPEYI INELNINSVI TTPGHAEILP INAFTTQKPY TLKGYAYSGG
401: GKKVTRVEVT LDGGDTWSVC ELDHQEKPNK YGKFWCWCFW SLDVEVLDLL SAKDVAVRAW DESFNTQPDK LIWNLMGMMN NCWFRIRTNV CKPHRGEIGI
501: VFEHPTRPGN QSGGWMAKER QLEISSESNN TLKKSVSSPF MNTASKMYSI SEVRKHNTAD SAWIIVHGHI YDCTRFLKDH PGGTDSILIN AGTDCTEEFE
601: AIHSDKAKKL LEDYRIGELI TTGYDSSPNV SVHGASNFGP LLAPIKELTP QKNIALVNPR EKIPVRLIEK TSISHDVRKF RFALPSEDQQ LGLPVGKHVF
701: VCANINDKLC LRAYTPTSAI DAVGHIDLVV KVYFKDVHPR FPNGGLMSQH LDSLPIGSMI DIKGPLGHIE YKGKGNFLVS GKPKFAKKLA MLAGGTGITP
801: IYQIIQSILS DPEDETEMYV VYANRTEDDI LVREELEGWA SKHKERLKIW YVVEIAKEGW SYSTGFITEA VLREHIPEGL EGESLALACG PPPMIQFALQ
901: PNLEKMGYNV KEDLLIF

Arabidopsis Description

NIA1Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:A0A178WBR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.