Factsheet for TraesCS6D01G306000.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

peroxisome 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome, plastid
MultiLoc:	peroxisome
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G251400.1
TraesCS6B01G273900.1
TraesCS6D01G233200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77760.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT1G77760.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT1G77760.1	TraesCS6D01G233200.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G326200.1	Wheat	plastid	97.99	97.55
TraesCS6B01G356800.1	Wheat	cytosol, peroxisome, plastid	97.65	97.44
Zm00001d052139_P001	Maize	cytosol, mitochondrion, peroxisome	63.58	87.81
Zm00001d018206_P001	Maize	peroxisome	64.47	87.42
Os02t0770800-01	Rice	cytosol	86.48	87.06
EES07601	Sorghum	cytosol, mitochondrion, peroxisome	86.15	86.44
GSMUA_Achr8P23160_001	Banana	mitochondrion	54.19	70.91
GSMUA_Achr9P15480_001	Banana	cytosol	59.44	70.84
CDY68886	Canola	cytosol, mitochondrion	56.09	69.05
TraesCS7D01G073700.1	Wheat	cytosol, nucleus, peroxisome	67.15	69.0
TraesCS6D01G020700.1	Wheat	cytosol, plastid	69.16	67.72
KRH18816	Soybean	cytosol, mitochondrion, peroxisome	66.26	66.93
VIT_18s0001g03910.t01	Wine grape	plastid	67.82	66.78
KRH53180	Soybean	cytosol, mitochondrion, peroxisome	66.15	66.52
Bra015656.1-P	Field mustard	cytosol	64.69	65.06
Bra008333.1-P	Field mustard	plastid	65.81	65.01
CDX88386	Canola	cytosol, plastid	64.58	64.65
PGSC0003DMT400077648	Potato	cytosol	65.7	64.54
Solyc11g013810.1.1	Tomato	cytosol, nucleus	65.7	64.47
KRH16605	Soybean	cytosol	63.8	64.45
Bra003670.1-P	Field mustard	plastid	65.47	64.4
CDX79234	Canola	plastid	65.47	64.32
CDX68044	Canola	plastid	65.25	64.18
AT1G77760.1	Thale cress	cytosol	65.36	63.8
KRH16606	Soybean	cytosol	62.12	63.69
AT1G37130.1	Thale cress	cytosol	64.02	62.49
CDX87505	Canola	cytosol, mitochondrion, peroxisome, plastid	19.11	61.29
CDX87504	Canola	cytosol	35.2	60.93
CDY26836	Canola	cytosol	37.65	60.5
KRH18814	Soybean	cytosol, mitochondrion, plastid	30.28	59.17
GSMUA_Achr3P07200_001	Banana	cytosol	67.93	54.04
GSMUA_Achr5P05820_001	Banana	mitochondrion, nucleus, peroxisome	21.79	42.67
GSMUA_Achr5P05830_001	Banana	cytosol	15.42	38.55
TraesCS3D01G332300.1	Wheat	unclear	11.28	36.2
TraesCS3D01G129500.1	Wheat	mitochondrion	12.18	35.28
TraesCS1D01G305400.1	Wheat	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	10.84	34.77

Protein Annotations

Gene3D:2.40.30.10	Gene3D:2.60.40.650	MapMan:25.1.4.1	Gene3D:3.10.120.10	Gene3D:3.40.50.80	Gene3D:3.90.420.10
InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006809	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0020037	GO:GO:0030151	GO:GO:0042128	GO:GO:0043546
GO:GO:0050464	GO:GO:0055114	InterPro:IPR001199	InterPro:IPR017927	InterPro:IPR036374	InterPro:IPR036400
InterPro:Ig_E-set	InterPro:MoCF_OxRdtse_dimer	InterPro:Mopterin_OxRdtase_euk	InterPro:NADH-Cyt_B5_reductase	InterPro:Nitr_rd_NADH	InterPro:OxRdtase_FAD-bd_dom
InterPro:OxRdtase_FAD/NAD-bd	InterPro:OxRdtase_Mopterin-bd_dom	InterPro:OxRdtase_Mopterin-bd_sf	InterPro:OxRdtase_Mopterin_BS	PFAM:PF00173	PFAM:PF00174
PFAM:PF00175	PFAM:PF00970	PFAM:PF03404	PIRSF:PIRSF000233	PRINTS:PR00363	PRINTS:PR00371
PRINTS:PR00406	PRINTS:PR00407	ScanProsite:PS00191	ScanProsite:PS00559	PFscan:PS50255	PFscan:PS51384
PANTHER:PTHR19370	PANTHER:PTHR19370:SF100	InterPro:Riboflavin_synthase-like_b-brl	SMART:SM01117	SUPFAM:SSF52343	SUPFAM:SSF55856
SUPFAM:SSF56524	SUPFAM:SSF63380	SUPFAM:SSF81296	EnsemblPlantsGene:TraesCS6D01G306000	EnsemblPlants:TraesCS6D01G306000.1	TIGR:cd02112
TIGR:cd06183	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:414622613..414625656

Molecular Weight (calculated)

98932.0 Da

IEP (calculated)

6.739

GRAVY (calculated)

-0.306

Length

895 amino acids

Sequence
(BLAST)

001: MAASVEYNRQ VSAHPWPTNA QPKAAFDLFS SSSGGRRRSG ADSDSDDEDG IPPDWRSLYS PRLDVEPSVK DPRDEATSDA WVKRHPALVR LTGKHPFNSE
101: PPLPRLMSHG FITPVPLHYV RNHGAVPKAD WSTWTVEVTG LVKRPVRLTM EELVTGFQAV EFPVTLVCAG NRRKEQNMVR QSSGFNWGPG AVSTTVWRGV
201: RLRDVLRRCG VMGAGVASNV CFEGAEDLPG GGGCKYGTSL RRSVAMDPAR DVILAYMQNG EPLAPDHGFP VRVIVPGFIG GRMVKWLKRI VVACNESESY
301: YHYRDNRVLP SHVDAELANA EAWWYKPECM INELNINSVI TTPGHDEVLP INALTTQKPY TMKGYAYSGG GRKVTRVEVT LDGGETWQVC ELDHPERPTK
401: YGKYWCWCFW SVDVEVLDLL GAKEIAVRAW DEALNTQPER LIWNLMGMMN NCWFRVKINV CRPHKGEIGL VFDHPTQPGN QSGGWMARQK HIETSETTQG
501: TLKRSTSTPF MSTASAQYTM SEVRRHASKE SAWIVVHGHV YDCTGFLKDH PGGADSILIN AGSDCTEEFD AIHSAKARGL LEMYRVGELI ATGTDYSPQS
601: SSADLAAIVE APAAGVEPLV LPPVSTTVAL ANPREKVRCR LVDKKSMSDN VRLFRFALPS PDQKLGLPVG KHVYVCASTG GKLCMRAYTP TSSVEEVGHV
701: DLLIKIYFKD EDPKFPAGGL MSQYLDSLPL GAPVDIKGPV GHIEYAGRGA FTVGGERRFA RRLAMVAGGT GITPVYQVIQ AVLRDQPDDT TEMHLVFANR
801: TEDDMLLREE IDRWAAAHPA RLKVWYVVSK VARPEDAWEY GVGRVDEQVL REHLPLGGDG ETLALVCGPP AMLECTVRPG LEKMGYDLDK DCLVF

Best Arabidopsis Sequence Match ( AT1G77760.1 )
(BLAST)

001: MATSVDNRHY PTMNGVAHAF KPPLVPSPRS FDRHRHQNQT LDVILTETKI VKETEVITTV VDSYDDSSSD DEDESHNRNV PYYKELVKKS NSDLEPSILD
101: PRDESTADSW IQRNSSMLRL TGKHPFNAEA PLPRLMHHGF ITPVPLHYVR NHGAVPKANW SDWSIEITGL VKRPAKFTME ELISEFPSRE FPVTLVCAGN
201: RRKEQNMVKQ TIGFNWGSAG VSTSLWKGIP LSEILRRCGI YSRRGGALNV CFEGAEDLPG GGGSKYGTSI KKEMAMDPAR DIILAYMQNG ELLTPDHGFP
301: VRVIVPGFIG GRMVKWLKRI IVTPQESDSY YHYKDNRVLP SLVDAELANS EAWWYKPEYI INELNINSVI TTPGHAEILP INAFTTQKPY TLKGYAYSGG
401: GKKVTRVEVT LDGGDTWSVC ELDHQEKPNK YGKFWCWCFW SLDVEVLDLL SAKDVAVRAW DESFNTQPDK LIWNLMGMMN NCWFRIRTNV CKPHRGEIGI
501: VFEHPTRPGN QSGGWMAKER QLEISSESNN TLKKSVSSPF MNTASKMYSI SEVRKHNTAD SAWIIVHGHI YDCTRFLKDH PGGTDSILIN AGTDCTEEFE
601: AIHSDKAKKL LEDYRIGELI TTGYDSSPNV SVHGASNFGP LLAPIKELTP QKNIALVNPR EKIPVRLIEK TSISHDVRKF RFALPSEDQQ LGLPVGKHVF
701: VCANINDKLC LRAYTPTSAI DAVGHIDLVV KVYFKDVHPR FPNGGLMSQH LDSLPIGSMI DIKGPLGHIE YKGKGNFLVS GKPKFAKKLA MLAGGTGITP
801: IYQIIQSILS DPEDETEMYV VYANRTEDDI LVREELEGWA SKHKERLKIW YVVEIAKEGW SYSTGFITEA VLREHIPEGL EGESLALACG PPPMIQFALQ
901: PNLEKMGYNV KEDLLIF

Arabidopsis Description

NIA1Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:A0A178WBR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.