CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
peroxisome 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24006
KRH27971
KRH29310
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77760.1	KRH24006	AT3G48150.1	21798944
AT1G77760.1	KRH27971	AT3G48150.1	21798944
AT1G77760.1	KRH29310	AT3G48150.1	21798944
AT1G77760.1	KRH77487	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18816	Soybean	cytosol, mitochondrion, peroxisome	80.11	80.47
VIT_18s0001g03910.t01	Wine grape	plastid	78.99	77.34
CDY68886	Canola	cytosol, mitochondrion	62.81	76.89
KRH16605	Soybean	cytosol	75.96	76.3
PGSC0003DMT400077648	Potato	cytosol	77.19	75.41
Solyc11g013810.1.1	Tomato	cytosol, nucleus	77.19	75.33
KRH16606	Soybean	cytosol	71.8	73.2
Bra003670.1-P	Field mustard	plastid	74.27	72.64
CDX79234	Canola	plastid	74.16	72.45
CDX68044	Canola	plastid	74.04	72.42
Bra008333.1-P	Field mustard	plastid	73.37	72.08
GSMUA_Achr8P23160_001	Banana	mitochondrion	55.17	71.78
CDX88386	Canola	cytosol, plastid	71.91	71.59
Bra015656.1-P	Field mustard	cytosol	71.57	71.57
CDX87505	Canola	cytosol, mitochondrion, peroxisome, plastid	22.36	71.33
AT1G37130.1	Thale cress	cytosol	73.26	71.1
AT1G77760.1	Thale cress	cytosol	73.03	70.88
GSMUA_Achr9P15480_001	Banana	cytosol	59.66	70.71
KRH18814	Soybean	cytosol, mitochondrion, plastid	36.29	70.52
CDY26836	Canola	cytosol	43.93	70.2
EES13985	Sorghum	cytosol, mitochondrion, peroxisome, plastid	71.12	68.73
Zm00001d049995_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	52.02	68.59
Zm00001d052139_P001	Maize	cytosol, mitochondrion, peroxisome	49.66	68.21
Zm00001d031769_P001	Maize	mitochondrion	52.7	68.17
Os08t0468100-01	Rice	plastid	70.11	68.12
TraesCS7D01G073700.1	Wheat	cytosol, nucleus, peroxisome	66.63	68.08
TraesCS7A01G078500.1	Wheat	cytosol	66.07	67.9
Os08t0468700-00	Rice	plastid	69.21	67.25
Zm00001d018206_P001	Maize	peroxisome	49.66	66.97
Os02t0770800-01	Rice	cytosol	66.85	66.93
EES07601	Sorghum	cytosol, mitochondrion, peroxisome	66.74	66.59
TraesCS6B01G024900.1	Wheat	cytosol, plastid	68.09	66.3
TraesCS6A01G017500.2	Wheat	cytosol, plastid	68.09	66.3
TraesCS6D01G020700.1	Wheat	cytosol, plastid	67.98	66.19
TraesCS4A01G376700.1	Wheat	cytosol	66.63	66.18
TraesCS6D01G306000.1	Wheat	cytosol, peroxisome, plastid	66.52	66.15
TraesCS6A01G326200.1	Wheat	plastid	66.18	65.52
TraesCS6B01G356800.1	Wheat	cytosol, peroxisome, plastid	65.84	65.33
HORVU6Hr1G003300.1	Barley	mitochondrion	68.09	63.72
Zm00001d017025_P001	Maize	cytosol	62.02	62.02
OQU85223	Sorghum	cytosol	62.81	60.56
GSMUA_Achr3P07200_001	Banana	cytosol	67.42	53.33
KRG89951	Soybean	mitochondrion	7.08	45.65
GSMUA_Achr5P05820_001	Banana	mitochondrion, nucleus, peroxisome	22.58	43.98
KRG94933	Soybean	mitochondrion	11.24	41.49
GSMUA_Achr5P05830_001	Banana	cytosol	16.29	40.5
KRH44741	Soybean	endoplasmic reticulum, peroxisome, plastid	13.37	40.07
KRH13184	Soybean	endoplasmic reticulum, peroxisome, plastid	13.26	39.73
KRH64963	Soybean	endoplasmic reticulum	11.8	37.77
KRG89948	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	5.51	35.0
KRH03716	Soybean	mitochondrion	12.13	33.86
KRH56619	Soybean	mitochondrion	12.25	33.75

Protein Annotations

Gene3D:2.40.30.10	Gene3D:2.60.40.650	MapMan:25.1.4.1	Gene3D:3.10.120.10	Gene3D:3.40.50.80	Gene3D:3.90.420.10
EntrezGene:732634	ProteinID:AAD19790.1	EMBL:ACUP02003452	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	EnsemblPlantsGene:GLYMA_06G109200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006809
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009703	GO:GO:0009987	GO:GO:0016491
GO:GO:0020037	GO:GO:0030151	GO:GO:0042128	GO:GO:0043546	GO:GO:0046872	GO:GO:0050464
GO:GO:0055114	InterPro:IPR001199	InterPro:IPR017927	InterPro:IPR036374	InterPro:IPR036400	InterPro:Ig_E-set
EnsemblPlants:KRH53180	ProteinID:KRH53180	ProteinID:KRH53180.1	InterPro:MoCF_OxRdtse_dimer	InterPro:Mopterin_OxRdtase_euk	InterPro:NADH-Cyt_B5_reductase
InterPro:Nitr_rd_NADH	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	InterPro:OxRdtase_Mopterin-bd_dom	InterPro:OxRdtase_Mopterin-bd_sf	InterPro:OxRdtase_Mopterin_BS
PFAM:PF00173	PFAM:PF00174	PFAM:PF00175	PFAM:PF00970	PFAM:PF03404	PIRSF:PIRSF000233
PRINTS:PR00363	PRINTS:PR00371	PRINTS:PR00406	PRINTS:PR00407	ScanProsite:PS00191	ScanProsite:PS00559
PFscan:PS50255	PFscan:PS51384	PANTHER:PTHR19370	PANTHER:PTHR19370:SF182	UniProt:Q9SYR0	InterPro:Riboflavin_synthase-like_b-brl
SMART:SM01117	SUPFAM:SSF52343	SUPFAM:SSF55856	SUPFAM:SSF56524	SUPFAM:SSF63380	SUPFAM:SSF81296
UniParc:UPI000009CC38	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:8794670..8799350

Molecular Weight (calculated)

100084.0 Da

IEP (calculated)

6.866

GRAVY (calculated)

-0.368

Length

890 amino acids

Sequence
(BLAST)

001: MAASVDQRPY PGLHNGVVRP LKPGPDIPRP KKLPQPPPPL SDSSSDEEED TTLNLKDLIR KGTTEVESSI FDPRDDGTSD HWIQRNSSLV RLTGKHPFNS
101: EPPLPRLMHH GFITPVPLHY VRNHGPVPRA RWEDWTVEVT GLVTRPTCFT MEQLLHDFPS REFPATLVCA GNRRKEQNMV KQSIGFNWGA AAISTSVWRG
201: VPLRTLLKSC GIYTRTKGAL HVCFEGAEDL PGGGGSKYGT SILREVALDP SRDIILAYMQ NGEPLSPDHG FPVRMIIPGF IGGRMVKWLK RIIVTTDQSQ
301: NYYHYKDNRV LPSHVDAELA NAQAWWYKPD YIINELNINS VITTPCHEEI LPINSWTTQM PYFIRGYAYS GGGRKVTRVE VTLDGGETWQ VCTLDCPEKP
401: NKYGKYWCWC FWSVEVEVLD LLGAREIAVR AWDEALNTQP EKLIWNVMGM MNNCWFRVKT NVCRPHKGEI GIVFEHPTQP GNQSGGWMAK EKHLEKSSES
501: NPTLKKSVSS PFMNTTSKTY TMSEVRRHNN ADSAWIIVHG HVYDCTRFLK DHPGGTDSIL INAGTDCTEE FEAIHSDKAK QMLEDYRIGE LTTTCYNSDS
601: SSSNPSVHGS SDTIPLTPIK EVITPMRSVA LNPREKIPCK LISKTSISHD VRLFRFALPS DDLLMGLPVG KHIFLCATVD EKLCMRAYTP TSSVHEVGYF
701: DLVVKVYFKG VHPKFPNGGI MSQHLDSLPI GSVLDVKGPL GHIEYTGRGN FLVHGKPRFA TRLAMLAGGT GITPIYQVVQ AILKDPEDCT EMHVVYANRT
801: EDDILLKEEL DEWAKKYDRL KVWYVIQESI REGWEYSVGF ITESILTEHI PNASPDTLAL TCGPPPMIQF AVQPNLEKLG YDTQNNLLVF

Best Arabidopsis Sequence Match ( AT1G77760.1 )
(BLAST)

001: MATSVDNRHY PTMNGVAHAF KPPLVPSPRS FDRHRHQNQT LDVILTETKI VKETEVITTV VDSYDDSSSD DEDESHNRNV PYYKELVKKS NSDLEPSILD
101: PRDESTADSW IQRNSSMLRL TGKHPFNAEA PLPRLMHHGF ITPVPLHYVR NHGAVPKANW SDWSIEITGL VKRPAKFTME ELISEFPSRE FPVTLVCAGN
201: RRKEQNMVKQ TIGFNWGSAG VSTSLWKGIP LSEILRRCGI YSRRGGALNV CFEGAEDLPG GGGSKYGTSI KKEMAMDPAR DIILAYMQNG ELLTPDHGFP
301: VRVIVPGFIG GRMVKWLKRI IVTPQESDSY YHYKDNRVLP SLVDAELANS EAWWYKPEYI INELNINSVI TTPGHAEILP INAFTTQKPY TLKGYAYSGG
401: GKKVTRVEVT LDGGDTWSVC ELDHQEKPNK YGKFWCWCFW SLDVEVLDLL SAKDVAVRAW DESFNTQPDK LIWNLMGMMN NCWFRIRTNV CKPHRGEIGI
501: VFEHPTRPGN QSGGWMAKER QLEISSESNN TLKKSVSSPF MNTASKMYSI SEVRKHNTAD SAWIIVHGHI YDCTRFLKDH PGGTDSILIN AGTDCTEEFE
601: AIHSDKAKKL LEDYRIGELI TTGYDSSPNV SVHGASNFGP LLAPIKELTP QKNIALVNPR EKIPVRLIEK TSISHDVRKF RFALPSEDQQ LGLPVGKHVF
701: VCANINDKLC LRAYTPTSAI DAVGHIDLVV KVYFKDVHPR FPNGGLMSQH LDSLPIGSMI DIKGPLGHIE YKGKGNFLVS GKPKFAKKLA MLAGGTGITP
801: IYQIIQSILS DPEDETEMYV VYANRTEDDI LVREELEGWA SKHKERLKIW YVVEIAKEGW SYSTGFITEA VLREHIPEGL EGESLALACG PPPMIQFALQ
901: PNLEKMGYNV KEDLLIF

Arabidopsis Description

NIA1Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:A0A178WBR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.