Factsheet for TraesCS4A01G376700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G251400.1
TraesCS6B01G273900.1
TraesCS6D01G233200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77760.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT1G77760.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT1G77760.1	TraesCS6D01G233200.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G073700.1	Wheat	cytosol, nucleus, peroxisome	91.96	94.6
TraesCS7A01G078500.1	Wheat	cytosol	91.07	94.23
TraesCS6A01G017500.2	Wheat	cytosol, plastid	83.48	81.84
Os08t0468100-01	Rice	plastid	82.03	80.24
EES13985	Sorghum	cytosol, mitochondrion, peroxisome, plastid	81.7	79.48
Os08t0468700-00	Rice	plastid	80.69	78.93
Zm00001d049995_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	59.38	78.81
Zm00001d031769_P001	Maize	mitochondrion	60.38	78.63
GSMUA_Achr9P15480_001	Banana	cytosol	59.93	71.5
GSMUA_Achr8P23160_001	Banana	mitochondrion	54.13	70.91
CDY68886	Canola	cytosol, mitochondrion	55.13	67.95
KRH18816	Soybean	cytosol, mitochondrion, peroxisome	66.74	67.49
VIT_18s0001g03910.t01	Wine grape	plastid	68.42	67.44
KRH53180	Soybean	cytosol, mitochondrion, peroxisome	66.18	66.63
TraesCS6A01G326200.1	Wheat	plastid	66.74	66.52
Solyc11g013810.1.1	Tomato	cytosol, nucleus	66.52	65.35
PGSC0003DMT400077648	Potato	cytosol	66.41	65.31
KRH16605	Soybean	cytosol	62.83	63.54
Bra003670.1-P	Field mustard	plastid	64.51	63.52
CDX68044	Canola	plastid	64.4	63.41
CDX79234	Canola	plastid	64.4	63.34
Bra015656.1-P	Field mustard	cytosol	62.83	63.26
CDX88386	Canola	cytosol, plastid	62.95	63.09
AT1G37130.1	Thale cress	cytosol	64.4	62.92
KRH16606	Soybean	cytosol	61.27	62.89
Bra008333.1-P	Field mustard	plastid	63.39	62.69
CDX87505	Canola	cytosol, mitochondrion, peroxisome, plastid	19.31	62.01
AT1G77760.1	Thale cress	cytosol	63.39	61.94
KRH18814	Soybean	cytosol, mitochondrion, plastid	30.92	60.48
CDY26836	Canola	cytosol	37.28	59.96
CDX87504	Canola	cytosol	33.59	58.22
GSMUA_Achr3P07200_001	Banana	cytosol	69.08	55.02
GSMUA_Achr5P05820_001	Banana	mitochondrion, nucleus, peroxisome	23.33	45.73
GSMUA_Achr5P05830_001	Banana	cytosol	17.63	44.13
TraesCS3A01G338700.1	Wheat	golgi	12.39	39.78
TraesCS1A01G305700.1	Wheat	golgi	12.05	38.71
TraesCS3A01G128600.1	Wheat	mitochondrion	12.39	35.81

Protein Annotations

Gene3D:2.40.30.10	Gene3D:2.60.40.650	MapMan:25.1.4.1	Gene3D:3.10.120.10	Gene3D:3.40.50.80	Gene3D:3.90.420.10
InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006809	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016491	GO:GO:0020037	GO:GO:0030151	GO:GO:0042128	GO:GO:0043546
GO:GO:0050464	GO:GO:0055114	InterPro:IPR001199	InterPro:IPR017927	InterPro:IPR036374	InterPro:IPR036400
InterPro:Ig_E-set	InterPro:MoCF_OxRdtse_dimer	InterPro:Mopterin_OxRdtase_euk	InterPro:NADH-Cyt_B5_reductase	InterPro:Nitr_rd_NADH	InterPro:OxRdtase_FAD-bd_dom
InterPro:OxRdtase_FAD/NAD-bd	InterPro:OxRdtase_Mopterin-bd_dom	InterPro:OxRdtase_Mopterin-bd_sf	InterPro:OxRdtase_Mopterin_BS	PFAM:PF00173	PFAM:PF00174
PFAM:PF00175	PFAM:PF00970	PFAM:PF03404	PIRSF:PIRSF000233	PRINTS:PR00363	PRINTS:PR00371
PRINTS:PR00406	PRINTS:PR00407	ScanProsite:PS00191	ScanProsite:PS00559	PFscan:PS50255	PFscan:PS51384
PANTHER:PTHR19370	PANTHER:PTHR19370:SF182	InterPro:Riboflavin_synthase-like_b-brl	SMART:SM01117	SUPFAM:SSF52343	SUPFAM:SSF55856
SUPFAM:SSF56524	SUPFAM:SSF63380	SUPFAM:SSF81296	EnsemblPlantsGene:TraesCS4A01G376700	EnsemblPlants:TraesCS4A01G376700.1	TIGR:cd02112
TIGR:cd06183	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:651365942..651370213

Molecular Weight (calculated)

99947.6 Da

IEP (calculated)

6.916

GRAVY (calculated)

-0.349

Length

896 amino acids

Sequence
(BLAST)

001: MFCSPCQSVL RVCIYTDLQS ANLLSHNKNM AASVEPKPAR MVRMEDAETS DNEEHEDWRE LYGSQLQLEV EPPVHDARDE GTADAWTERN PSLIRLTGKH
101: PFNCEPPLAR LMHHGFITPA PLHYVRNHGP VPRGDWSEWT VEVSGLVSRP ARFTMDELVR EFPAAELPVT LVCAGNRRKE QNMVRQTAGF NWGAAGASTS
201: VWRGARLRDV LRRCGIMGLN KGRGALHVCF VGAEDLPGGG GGAKYGTSVT REWALDPSRD IMLAYAQNGE PLLPDHGFPV RVIIPGCIGG RMVKWLTRVV
301: VTAAESDNYY HFKDNRVLPS HVDAELADSH AWWYKPEYII NELNTNSVIT TPGHDEILPI NAFTTQRAYT MKGYAYAGGG KKIIRVEVTL DGGETWMLCT
401: LDIPEKPNKY GRYWCWCFWS VDVEVLDLLG AKEVAVRAWD QAQNTQPEKL IWNLMGMMNK CWFKVKVNVC RPHKREIGLV FEHPTQPANQ TGGWMARQKH
501: METAAPGLKR STSTPFIHTT DDKQFTMSEV RKHGSKDSAW IVVHGHVNDC TAFLKDHPGG ADSILINAGT DCTEEFDAIH SDKAKALLDA HRIGQLITTG
601: AGYASDNSVH GGSSLAPIRE ATKAAAAPIA LSSPREKIRC SLVDKKELSH DVRLFRFALP SPDQVLGLPV GKHIFVCANI EGKLCMRPYT PTSMVDELGQ
701: FELLVKVYFK NEHPKFPDGG VMTQYLESLQ VGSSHIDVKG PLGHVEYTGR GNFMIGGKPR RARRLAMICG GSGITPMYQV IQAVLRDQPG DETEMHLVYA
801: NRTEDDILLR DELDRWAAEH PDKLKVWYVV DQVKRPEEGW KFSVGHVRED ILCAHVPEGG DDTLALACGP PPMIKFAISP NLEKMKYDMA NSFITF

Best Arabidopsis Sequence Match ( AT1G37130.1 )
(BLAST)

001: MAASVDNRQY ARLEPGLNGV VRSYKPPVPG RSDSPKAHQN QTTNQTVFLK PAKVHDDDED VSSEDENETH NSNAVYYKEM IRKSNAELEP SVLDPRDEYT
101: ADSWIERNPS MVRLTGKHPF NSEAPLNRLM HHGFITPVPL HYVRNHGHVP KAQWAEWTVE VTGFVKRPMK FTMDQLVSEF AYREFAATLV CAGNRRKEQN
201: MVKKSKGFNW GSAGVSTSVW RGVPLCDVLR RCGIFSRKGG ALNVCFEGSE DLPGGAGTAG SKYGTSIKKE YAMDPSRDII LAYMQNGEYL TPDHGFPVRI
301: IIPGFIGGRM VKWLKRIIVT TKESDNFYHF KDNRVLPSLV DAELADEEGW WYKPEYIINE LNINSVITTP CHEEILPINA FTTQRPYTLK GYAYSGGGKK
401: VTRVEVTVDG GETWNVCALD HQEKPNKYGK FWCWCFWSLE VEVLDLLSAK EIAVRAWDET LNTQPEKMIW NLMGMMNNCW FRVKTNVCKP HKGEIGIVFE
501: HPTLPGNESG GWMAKERHLE KSADAPPSLK KSVSTPFMNT TAKMYSMSEV KKHNSADSCW IIVHGHIYDC TRFLMDHPGG SDSILINAGT DCTEEFEAIH
601: SDKAKKMLED YRIGELITTG YSSDSSSPNN SVHGSSAVFS LLAPIGEATP VRNLALVNPR AKVPVQLVEK TSISHDVRKF RFALPVEDMV LGLPVGKHIF
701: LCATINDKLC LRAYTPSSTV DVVGYFELVV KIYFGGVHPR FPNGGLMSQY LDSLPIGSTL EIKGPLGHVE YLGKGSFTVH GKPKFADKLA MLAGGTGITP
801: VYQIIQAILK DPEDETEMYV IYANRTEEDI LLREELDGWA EQYPDRLKVW YVVESAKEGW AYSTGFISEA IMREHIPDGL DGSALAMACG PPPMIQFAVQ
901: PNLEKMQYNI KEDFLIF

Arabidopsis Description

NIA2Nitrate reductase [NADH] 2 [Source:UniProtKB/Swiss-Prot;Acc:P11035]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.