CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77760.1	CDY36901	AT3G48150.1	21798944
AT1G77760.1	CDY44976	AT3G48150.1	21798944
AT1G77760.1	CDY58069	AT3G48150.1	21798944
AT1G77760.1	CDY58070	AT3G48150.1	21798944
AT1G77760.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003670.1-P	Field mustard	plastid	99.78	99.78
CDX79234	Canola	plastid	98.35	98.24
CDY68886	Canola	cytosol, mitochondrion	76.81	96.15
CDX87505	Canola	cytosol, mitochondrion, peroxisome, plastid	28.35	92.47
AT1G77760.1	Thale cress	cytosol	90.66	89.97
CDX88386	Canola	cytosol, plastid	87.91	89.49
CDY26836	Canola	cytosol	53.41	87.25
CDX87504	Canola	cytosol	45.05	79.3
VIT_18s0001g03910.t01	Wine grape	plastid	75.93	76.02
KRH18816	Soybean	cytosol, mitochondrion, peroxisome	73.52	75.51
PGSC0003DMT400077648	Potato	cytosol	75.27	75.19
Solyc11g013810.1.1	Tomato	cytosol, nucleus	75.16	75.0
KRH53180	Soybean	cytosol, mitochondrion, peroxisome	72.42	74.04
KRH16605	Soybean	cytosol	68.9	70.77
GSMUA_Achr9P15480_001	Banana	cytosol	57.36	69.51
GSMUA_Achr8P23160_001	Banana	mitochondrion	51.98	69.15
KRH16606	Soybean	cytosol	65.6	68.38
Zm00001d049995_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	50.11	67.56
EES13985	Sorghum	cytosol, mitochondrion, peroxisome, plastid	67.91	67.1
TraesCS7A01G078500.1	Wheat	cytosol	63.41	66.63
TraesCS7D01G073700.1	Wheat	cytosol, nucleus, peroxisome	63.52	66.36
Os08t0468100-01	Rice	plastid	66.7	66.27
Zm00001d052139_P001	Maize	cytosol, mitochondrion, peroxisome	47.03	66.05
Zm00001d031769_P001	Maize	mitochondrion	49.89	65.99
Os02t0770800-01	Rice	cytosol	64.07	65.58
TraesCS6A01G017500.2	Wheat	cytosol, plastid	65.71	65.43
TraesCS6B01G024900.1	Wheat	cytosol, plastid	65.6	65.32
Os08t0468700-00	Rice	plastid	65.71	65.28
TraesCS6D01G306000.1	Wheat	cytosol, peroxisome, plastid	64.18	65.25
TraesCS6D01G020700.1	Wheat	cytosol, plastid	65.49	65.21
EES07601	Sorghum	cytosol, mitochondrion, peroxisome	63.85	65.13
Zm00001d018206_P001	Maize	peroxisome	47.03	64.85
KRH18814	Soybean	cytosol, mitochondrion, plastid	32.64	64.85
TraesCS6B01G356800.1	Wheat	cytosol, peroxisome, plastid	63.52	64.44
TraesCS6A01G326200.1	Wheat	plastid	63.63	64.4
TraesCS4A01G376700.1	Wheat	cytosol	63.41	64.4
HORVU6Hr1G003300.1	Barley	mitochondrion	65.49	62.67
Zm00001d017025_P001	Maize	cytosol	60.77	62.13
OQU85223	Sorghum	cytosol	60.88	60.02
GSMUA_Achr3P07200_001	Banana	cytosol	64.73	52.36
GSMUA_Achr5P05820_001	Banana	mitochondrion, nucleus, peroxisome	20.88	41.58
GSMUA_Achr5P05830_001	Banana	cytosol	15.05	38.27
CDY02688	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	11.1	35.94
CDY59316	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	11.1	35.94
CDY63711	Canola	cytosol	8.68	35.75
CDX78759	Canola	endoplasmic reticulum	10.88	35.23
CDY38457	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	10.77	34.88
CDX70774	Canola	endoplasmic reticulum	10.33	34.56
CDY28560	Canola	endoplasmic reticulum	4.84	23.04
CDY16891	Canola	golgi, plasma membrane, vacuole	14.29	16.35

Protein Annotations

Gene3D:2.40.30.10	Gene3D:2.60.40.650	MapMan:25.1.4.1	Gene3D:3.10.120.10	Gene3D:3.40.50.80	Gene3D:3.90.420.10
GO:A0A078BW82	EnsemblPlants:CDX68044	ProteinID:CDX68044	ProteinID:CDX68044.1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf
InterPro:Cyt_B5_heme-BS	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006809	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491
GO:GO:0020037	GO:GO:0030151	GO:GO:0042128	GO:GO:0043546	GO:GO:0050464	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00099269001	InterPro:IPR001199	InterPro:IPR017927	InterPro:IPR036374	InterPro:IPR036400	InterPro:Ig_E-set
InterPro:MoCF_OxRdtse_dimer	InterPro:Mopterin_OxRdtase_euk	InterPro:NADH-Cyt_B5_reductase	InterPro:Nitr_rd_NADH	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd
InterPro:OxRdtase_Mopterin-bd_dom	InterPro:OxRdtase_Mopterin-bd_sf	InterPro:OxRdtase_Mopterin_BS	PFAM:PF00173	PFAM:PF00174	PFAM:PF00175
PFAM:PF00970	PFAM:PF03404	PIRSF:PIRSF000233	PRINTS:PR00363	PRINTS:PR00371	PRINTS:PR00406
PRINTS:PR00407	ScanProsite:PS00191	ScanProsite:PS00559	PFscan:PS50255	PFscan:PS51384	PANTHER:PTHR19370
PANTHER:PTHR19370:SF182	InterPro:Riboflavin_synthase-like_b-brl	SMART:SM01117	SUPFAM:SSF52343	SUPFAM:SSF55856	SUPFAM:SSF56524
SUPFAM:SSF63380	SUPFAM:SSF81296	UniParc:UPI0004EEE57C	SEG:seg	:	:

Description

BnaA07g20840D

Coordinates

chrLK031787:+:3521161..3524955

Molecular Weight (calculated)

102253.0 Da

IEP (calculated)

7.064

GRAVY (calculated)

-0.375

Length

910 amino acids

Sequence
(BLAST)

001: MATVDNRHYP RLNPAINGVV RSFKPPPIPS PRHQNKTVSV PTEKIVVRET KNDVVEHSYD SSDDEDESHN RNVSYYKEMI RKSNSDVEPS ILDSRDESTA
101: DNWIHRNSSM VRLTGKHPFN AEPPLPRLMH HGFITPVPLH YVRNHGTVPK ADWSDWTVEI IGLVKRPAKF TMEQLISEFP SREFPVTLVC AGNRRKEQNM
201: VKQTIGFNWG SAGVSTSLWK GVPLSEILRR CGIYSRRGGA LNVCFEGAED LPGGGGSKYG TSIKKEMAMD PARDIILAYM QNGELLTPDH GFPVRIIVPG
301: FIGGRMVKWL KRIIVTPQES DSYYHYKDNR VLPSLVDAEL ANAEAWWYKP EYIINELNIN SVITTPGHQE ILPINAFTTQ KPYTLKGYAY SGGGKKVTRV
401: EVTLDGGDTW SVCDLDHQEK PNKYGKFWCW CFWSLDVEVL DLLSAKDVAV RAWDESFNTQ PDKLIWNLMG MMNNCWFRIK TNVCKPHKGE IGIVFEHPTR
501: PGNQSGGWMA KERQLEISSE SNPILKKSVS SPFMNTSAKM YSMSEVRKHN SVESAWIIVH GHIYDCTRFL KDHPGGSDSI LINAGTDCTE EFEAIHSDKA
601: KKLLEDYRIG ELITTGYDSS PNVSVHGGSN AVSLLAPIKE LAPSKNIALV NPREKVPVTL IEKTSISHDV RRFRFALPSE DQQLGLPVGK HIFLCANIND
701: KLCLRAYTPT STVDAVGHID LVVKVYFKDV HPRFPNGGLM SQHLDSLPIG SVLNIKGPLG HIEYQGKGNF MVNGKPKFAK KLAMLAGGTG ITPIYQVIQS
801: ILSDPEDETE MFVVYANRTE DDILVREELE GWANKHKDRL KVWYVVEIAK EGWNYSTGFI TEAVLREHVP EGLEGESLAL ACGPPPMIQF ALQPNLEKMG
901: YNVKEDLLIF

Best Arabidopsis Sequence Match ( AT1G77760.1 )
(BLAST)

001: MATSVDNRHY PTMNGVAHAF KPPLVPSPRS FDRHRHQNQT LDVILTETKI VKETEVITTV VDSYDDSSSD DEDESHNRNV PYYKELVKKS NSDLEPSILD
101: PRDESTADSW IQRNSSMLRL TGKHPFNAEA PLPRLMHHGF ITPVPLHYVR NHGAVPKANW SDWSIEITGL VKRPAKFTME ELISEFPSRE FPVTLVCAGN
201: RRKEQNMVKQ TIGFNWGSAG VSTSLWKGIP LSEILRRCGI YSRRGGALNV CFEGAEDLPG GGGSKYGTSI KKEMAMDPAR DIILAYMQNG ELLTPDHGFP
301: VRVIVPGFIG GRMVKWLKRI IVTPQESDSY YHYKDNRVLP SLVDAELANS EAWWYKPEYI INELNINSVI TTPGHAEILP INAFTTQKPY TLKGYAYSGG
401: GKKVTRVEVT LDGGDTWSVC ELDHQEKPNK YGKFWCWCFW SLDVEVLDLL SAKDVAVRAW DESFNTQPDK LIWNLMGMMN NCWFRIRTNV CKPHRGEIGI
501: VFEHPTRPGN QSGGWMAKER QLEISSESNN TLKKSVSSPF MNTASKMYSI SEVRKHNTAD SAWIIVHGHI YDCTRFLKDH PGGTDSILIN AGTDCTEEFE
601: AIHSDKAKKL LEDYRIGELI TTGYDSSPNV SVHGASNFGP LLAPIKELTP QKNIALVNPR EKIPVRLIEK TSISHDVRKF RFALPSEDQQ LGLPVGKHVF
701: VCANINDKLC LRAYTPTSAI DAVGHIDLVV KVYFKDVHPR FPNGGLMSQH LDSLPIGSMI DIKGPLGHIE YKGKGNFLVS GKPKFAKKLA MLAGGTGITP
801: IYQIIQSILS DPEDETEMYV VYANRTEDDI LVREELEGWA SKHKERLKIW YVVEIAKEGW SYSTGFITEA VLREHIPEGL EGESLALACG PPPMIQFALQ
901: PNLEKMGYNV KEDLLIF

Arabidopsis Description

NIA1Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:A0A178WBR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.