Factsheet for TraesCS3D01G332300.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	peroxisome, plastid, secretory
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G338700.1	Wheat	golgi	99.64	99.64
TraesCS3B01G370400.1	Wheat	endoplasmic reticulum	98.92	98.92
HORVU3Hr1G080010.1	Barley	cytosol, peroxisome	28.67	98.77
Os01t0814900-01	Rice	plasma membrane	89.96	89.96
EES03792	Sorghum	endoplasmic reticulum	88.89	88.89
KRG94933	Soybean	mitochondrion	74.19	85.89
TraesCS1D01G305400.1	Wheat	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	84.95	84.95
KRH64963	Soybean	endoplasmic reticulum	81.72	82.01
GSMUA_Achr8P21540_001	Banana	endoplasmic reticulum	81.0	81.59
Zm00001d043098_P002	Maize	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	87.81	80.07
VIT_08s0056g01150.t01	Wine grape	endoplasmic reticulum	77.78	78.34
PGSC0003DMT400072515	Potato	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	77.06	77.34
CDY38457	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	77.42	76.87
Solyc10g081440.1.1	Tomato	extracellular, plastid	76.34	76.62
CDX78759	Canola	endoplasmic reticulum	77.06	76.51
Bra002104.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	76.7	76.16
Bra006419.1-P	Field mustard	endoplasmic reticulum	76.7	75.89
AT5G17770.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	76.34	75.8
CDY59316	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	75.99	75.44
CDY02688	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	75.63	75.09
CDX70774	Canola	endoplasmic reticulum	72.76	74.63
Bra023636.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	66.67	74.1
CDY63711	Canola	cytosol	58.06	73.3
Zm00001d017490_P001	Maize	mitochondrion	22.58	61.16
TraesCS3D01G129500.1	Wheat	mitochondrion	44.44	40.13
CDY28560	Canola	endoplasmic reticulum	25.81	37.7
CDY16891	Canola	golgi, plasma membrane, vacuole	77.78	27.3
TraesCS7D01G073700.1	Wheat	cytosol, nucleus, peroxisome	39.07	12.51
TraesCS6D01G020700.1	Wheat	cytosol, plastid	37.99	11.6
TraesCS6D01G306000.1	Wheat	cytosol, peroxisome, plastid	36.2	11.28

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927
InterPro:NADH-Cyt_B5_reductase	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970	PRINTS:PR00371
PRINTS:PR00406	PFscan:PS51384	PANTHER:PTHR19370	PANTHER:PTHR19370:SF175	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343
SUPFAM:SSF63380	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G332300	EnsemblPlants:TraesCS3D01G332300.1	TIGR:cd06183	SEG:seg

Description

No Description!

Coordinates

chr3D:-:444673117..444676244

Molecular Weight (calculated)

31043.9 Da

IEP (calculated)

8.844

GRAVY (calculated)

-0.194

Length

279 amino acids

Sequence
(BLAST)

001: MDFLQGRSVE TMVAVAVAVV AVAVGGALLL RRSKRPKGCL DPENFKKFKL VEKTQISHNV AKFRFALPTP TSVLGLPIGQ HISCRGQDAT GEEVIKPYTP
101: TTLDSDLGNF QLVIKMYPQG RMSHHFREMK VGDYMSVKGP KGRFKYQVGQ VRAFGMLAGG SGITPMFQVA RAILENPNDK TKVHLVYANV TPEDILLKEE
201: LDSLAEEYPD RFKIFYVLNQ PPEVWNGGVG FVSQDMIKTH CPAPAEDIQI LRCGPPPMNK AMAAHLEELG YTKEMQFQF

Best Arabidopsis Sequence Match ( AT5G17770.1 )
(BLAST)

001: MDTEFLRTLD RQILLGVFVA FVAVGAGAAY FLTSSKKRRV CLDPENFKEF KLVKRHQLSH NVAKFVFELP TSTSVLGLPI GQHISCRGKD GQGEDVIKPY
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F

Arabidopsis Description

CBR1NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178US77]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,mitochondrion,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.