Factsheet for PGSC0003DMT400072515

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, peroxisome, golgi, plasma membrane, vacuole, endoplasmic reticulum, mitochondrion, plastid

Predictor Summary:

cytosol 1
mitochondrion 3
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, peroxisome, plastid, secretory
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081440.1.1	Tomato	extracellular, plastid	98.56	98.56
KRG94933	Soybean	mitochondrion	76.62	88.38
KRH64963	Soybean	endoplasmic reticulum	83.81	83.81
VIT_08s0056g01150.t01	Wine grape	endoplasmic reticulum	82.01	82.31
Bra002104.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	82.73	81.85
CDY38457	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	82.73	81.85
AT5G17770.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	82.73	81.85
Bra006419.1-P	Field mustard	endoplasmic reticulum	80.94	79.79
CDX78759	Canola	endoplasmic reticulum	80.22	79.36
CDY59316	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	80.22	79.36
CDY02688	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	79.86	79.0
TraesCS1B01G316400.1	Wheat	unclear	78.78	78.49
GSMUA_Achr8P21540_001	Banana	endoplasmic reticulum	77.7	77.98
CDX70774	Canola	endoplasmic reticulum	76.26	77.94
TraesCS1A01G305700.1	Wheat	golgi	78.06	77.78
TraesCS1D01G305400.1	Wheat	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	78.06	77.78
TraesCS3B01G370400.1	Wheat	endoplasmic reticulum	78.06	77.78
Bra023636.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	70.14	77.69
TraesCS3D01G332300.1	Wheat	unclear	77.34	77.06
TraesCS3A01G338700.1	Wheat	golgi	77.34	77.06
Os05t0488900-01	Rice	endoplasmic reticulum	78.06	76.95
EES18413	Sorghum	plastid	76.98	76.7
EES03792	Sorghum	endoplasmic reticulum	76.98	76.7
Os01t0814900-01	Rice	plasma membrane	75.18	74.91
CDY63711	Canola	cytosol	59.35	74.66
Zm00001d038529_P003	Maize	plasma membrane	77.7	69.9
Zm00001d043098_P002	Maize	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	76.62	69.61
HORVU3Hr1G079960.7	Barley	endoplasmic reticulum	51.8	65.16
Zm00001d017490_P001	Maize	mitochondrion	21.22	57.28
CDY28560	Canola	endoplasmic reticulum	27.7	40.31
CDY16891	Canola	golgi, plasma membrane, vacuole	83.09	29.06
PGSC0003DMT400077648	Potato	cytosol	37.05	11.31

Protein Annotations

EntrezGene:102598093	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.6	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase
GO:GO:0003674	GO:GO:0003824	GO:GO:0004128	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009505	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0022900	GO:GO:0030312	GO:GO:0055114	InterPro:IPR017927	UniProt:M1CQF8	InterPro:NADH-Cyt_B5_reductase
InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970	EnsemblPlantsGene:PGSC0003DMG400028214	PGSC:PGSC0003DMG400028214
EnsemblPlants:PGSC0003DMT400072515	PRINTS:PR00371	PRINTS:PR00406	PFscan:PS51384	PANTHER:PTHR19370	PANTHER:PTHR19370:SF175
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI000294D83E	RefSeq:XP_006339205.1
RefSeq:XP_006339206.1	SEG:seg	:	:	:	:

Description

NADH:cytochrome b5 reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400028214]

Coordinates

chr10:+:56532947..56538457

Molecular Weight (calculated)

31105.6 Da

IEP (calculated)

7.573

GRAVY (calculated)

-0.254

Length

278 amino acids

Sequence
(BLAST)

001: MEFLERPDAQ LIIGVAVAAV AVGATAYFYF SSKKSKVCLN PEEFRAFKLV KRTQLSHNVA KFRFELPTPT SVLGLPIGQH ISCRGKDSQG EEVVKPYTPT
101: TLDSDIGYFE LVIKMYPQGR MSHHFREMRE GDYMEVKGPK GRFKYQPGQV RAFGMLAGGS GITPMFQVAR AILENPNDAT KVHLIYANVT SEDILLKEEL
201: EGLTANYPDR FKVYYVLNQP PEEWSGGVGF VSKEMIQTHC PAPADDIKIL RCGPPPMNKA MAAHLEALGY SPEMQFQF

Best Arabidopsis Sequence Match ( AT5G17770.1 )
(BLAST)

001: MDTEFLRTLD RQILLGVFVA FVAVGAGAAY FLTSSKKRRV CLDPENFKEF KLVKRHQLSH NVAKFVFELP TSTSVLGLPI GQHISCRGKD GQGEDVIKPY
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F

Arabidopsis Description

CBR1NADH-cytochrome b5 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178US77]
SUBAcon: [extracellular,cytosol,peroxisome,golgi,plasma membrane,vacuole,endoplasmic reticulum,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.