Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra027748.1-P | Field mustard | nucleus | 14.33 | 26.14 |
PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 26.17 | 24.14 |
GSMUA_Achr6P35030_001 | Banana | nucleus | 34.89 | 21.17 |
GSMUA_Achr4P23560_001 | Banana | nucleus | 31.46 | 18.84 |
VIT_19s0015g00430.t01 | Wine grape | nucleus | 28.66 | 15.36 |
Solyc10g006000.2.1 | Tomato | nucleus | 26.17 | 15.16 |
Solyc07g065490.2.1 | Tomato | nucleus | 29.91 | 15.14 |
PGSC0003DMT400057390 | Potato | extracellular, nucleus | 30.22 | 14.2 |
KRG98507 | Soybean | nucleus | 30.84 | 13.47 |
KRH46360 | Soybean | nucleus | 30.22 | 13.11 |
GSMUA_Achr10P... | Banana | nucleus | 22.43 | 12.95 |
CDY06563 | Canola | nucleus | 27.1 | 12.66 |
GSMUA_Achr11P... | Banana | nucleus | 21.5 | 12.66 |
KRH46364 | Soybean | nucleus | 31.78 | 12.64 |
AT4G26630.1 | Thale cress | nucleus | 27.41 | 11.53 |
KRG98502 | Soybean | nucleus | 24.61 | 10.82 |
CDY20754 | Canola | nucleus | 26.48 | 10.71 |
AT5G55660.1 | Thale cress | nucleus | 25.55 | 10.54 |
CDY28645 | Canola | nucleus | 25.86 | 10.47 |
CDY17352 | Canola | extracellular, vacuole | 26.48 | 10.27 |
CDX89318 | Canola | nucleus | 20.56 | 9.38 |
CDX94304 | Canola | nucleus | 12.46 | 9.15 |
CDX97358 | Canola | nucleus | 26.79 | 7.09 |
GSMUA_Achr9P09240_001 | Banana | nucleus | 4.67 | 4.95 |
Protein Annotations
EnsemblPlants:GSMUA_Achr9P09250_001 | EnsemblPlants:GSMUA_Achr9T09250_001 | EnsemblPlantsGene:GSMUA_Achr9G09250_001 | Gene3D:1.10.10.60 | GO:GO:0005575 | GO:GO:0016020 |
GO:GO:0016021 | InterPro:DEK_C | ncoils:Coil | PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 | PFAM:PF08766 |
SEG:seg | SUPFAM:SSF109715 | TMHMM:TMhelix | UniParc:UPI0002961D35 | UniProt:M0TYT4 | MapMan:35.2 |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G09250_001]
Coordinates
chr9:+:5997900..6000581
Molecular Weight (calculated)
36500.7 Da
IEP (calculated)
6.995
GRAVY (calculated)
-1.007
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVEKFFLFV LLYMHKWDCA ILYSCIFFTT LLSLCLFTEW LYFSSITCSH FHFLFIWKQS TKSRKRKRVA QGSGSKSMDH THSKISRKKQ TKSEETLSED
101: DKSAQEMDNE DDIKNSPYKR KAVKHSENEG ETSECEEASE EDAHDEEDSG KGKQDKKKTS KQGSVGKEKI GSSSEKVPTP ATTKSPAQSS SKCSKAEYDD
201: DIGAKVFSRK KRTVDSPMKK SAPRSDKKEK DTGKKVAKSK TKSEAEHPSK EELREKICEI LKEVDFNTAT FTDILKRLAT HYKGDLTPRK ASIKLLIQEE
301: LTRLAEAAEE DEDDEDEEDA G
101: DKSAQEMDNE DDIKNSPYKR KAVKHSENEG ETSECEEASE EDAHDEEDSG KGKQDKKKTS KQGSVGKEKI GSSSEKVPTP ATTKSPAQSS SKCSKAEYDD
201: DIGAKVFSRK KRTVDSPMKK SAPRSDKKEK DTGKKVAKSK TKSEAEHPSK EELREKICEI LKEVDFNTAT FTDILKRLAT HYKGDLTPRK ASIKLLIQEE
301: LTRLAEAAEE DEDDEDEEDA G
001: MFCLDDICTQ FHYVFQDDYL KNLVYEAGST SEKEEFDSYM NEIEKKNSEA RKWLDQFPQY QWAQAHDSGR RYRVMTIDAE NLFAFCESFQ SLGLPVTATA
101: LLLFDEMRFF FYSGLCDSSG RVNRGDMYTK PVMDQLEKLM TDSIPHVVMP LEKGLFQVTE PLQEDEWIVQ LSEWSCTCGE FQLKKFPCLH VLAVCEKLKI
201: NPLQYVDDCY SLDRLYKTYA ATFSPVPEVA AWPEASGVPT LFPPVILPPP NVSVNDKAKV PPSDEELRNA IVDILKVVDL KTTAIADVLK RLAEKFEIDL
301: TPRKSSIKTM IQNELSS
101: LLLFDEMRFF FYSGLCDSSG RVNRGDMYTK PVMDQLEKLM TDSIPHVVMP LEKGLFQVTE PLQEDEWIVQ LSEWSCTCGE FQLKKFPCLH VLAVCEKLKI
201: NPLQYVDDCY SLDRLYKTYA ATFSPVPEVA AWPEASGVPT LFPPVILPPP NVSVNDKAKV PPSDEELRNA IVDILKVVDL KTTAIADVLK RLAEKFEIDL
301: TPRKSSIKTM IQNELSS
Arabidopsis Description
DEK carboxy-terminal domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AUN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.