Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 26.14 | 14.33 |
| Bra038644.1-P | Field mustard | nucleus | 27.84 | 10.0 |
| Zm00001d033159_P001 | Maize | nucleus | 23.86 | 9.4 |
| Bra019559.1-P | Field mustard | nucleus | 21.59 | 9.09 |
| EER91265 | Sorghum | nucleus | 30.68 | 8.37 |
| Zm00001d013757_P010 | Maize | nucleus | 28.41 | 7.66 |
| Bra035837.1-P | Field mustard | nucleus | 23.86 | 7.65 |
| Bra026415.1-P | Field mustard | nucleus | 33.52 | 7.07 |
| Bra035582.1-P | Field mustard | nucleus | 31.82 | 7.05 |
| Os03t0596900-01 | Rice | nucleus | 27.84 | 6.97 |
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 31.82 | 6.47 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 25.57 | 4.6 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 24.43 | 4.42 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 24.43 | 4.29 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 23.3 | 4.14 |
| Bra010432.1-P | Field mustard | nucleus | 25.57 | 3.98 |
| Bra029213.1-P | Field mustard | nucleus | 6.25 | 3.9 |
| OQU91413 | Sorghum | nucleus | 21.02 | 2.74 |
Protein Annotations
| EnsemblPlants:Bra027748.1 | EnsemblPlants:Bra027748.1-P | EnsemblPlantsGene:Bra027748 | Gene3D:1.10.10.60 | InterPro:DEK_C | ncoils:Coil |
| PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 | PFAM:PF08766 | SEG:seg | SUPFAM:SSF109715 | UniParc:UPI0002542282 |
| UniProt:M4EG35 | MapMan:35.2 | : | : | : | : |
Description
AT4G26630 (E=2e-014) | EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55660.1); Has 253164 Blast hits to 95130 proteins in 2571 species: Archae - 852; Bacteria - 27744; Metazoa - 108483; Fungi - 29060; Plants - 10256; Viruses - 1718; Other Eukaryotes - 75051 (source: NCBI BLink).
Coordinates
chrA09:+:6485299..6487625
Molecular Weight (calculated)
20045.5 Da
IEP (calculated)
4.340
GRAVY (calculated)
-0.852
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKYVLVTVM CDSDLERMLE VPSKHPSINT LELFLDVKPT ASVVPPPADF SWSMAKPSGP SKRQKRTQPA NKDEPKNYSY ADGKGKGKGK SKEPPSDEEL
101: RNAILDILKV MDFKMASFTD IIKQLADKFR YNLTARKSSI EVMIQYELEK YAADSEEEEE EDEGEEEEEE DEEGLW
101: RNAILDILKV MDFKMASFTD IIKQLADKFR YNLTARKSSI EVMIQYELEK YAADSEEEEE EDEGEEEEEE DEEGLW
001: MDQLEKLMTD SIPHVVMPLE KGLFQVTEPL QEDEWIVQLS EWSCTCGEFQ LKKFPCLHVL AVCEKLKINP LQYVDDCYSL DRLYKTYAAT FSPVPEVAAW
101: PEASGVPTLF PPVILPPPNV SVNDKAKVPP SDEELRNAIV DILKVVDLKT TAIADVLKRL AEKFEIDLTP RKSSIKTMIQ NELSS
101: PEASGVPTLF PPVILPPPNV SVNDKAKVPP SDEELRNAIV DILKVVDLKT TAIADVLKRL AEKFEIDLTP RKSSIKTMIQ NELSS
Arabidopsis Description
DEK carboxy-terminal domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AUN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.