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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000357.1-P
Bra000358.1-P
Bra001301.1-P
Bra001340.1-P
Bra001962.1-P
Bra002880.1-P
Bra003012.1-P
Bra003294.1-P
Bra003946.1-P
Bra004249.1-P
Bra004300.1-P
Bra004420.1-P
Bra004852.1-P
Bra004853.1-P
Bra004855.1-P
Bra005852.1-P
Bra006382.1-P
Bra007345.1-P
Bra007733.1-P
Bra008229.1-P
Bra008580.1-P
Bra008661.1-P
Bra008756.1-P
Bra009112.1-P
Bra009182.1-P
Bra009665.1-P
Bra009683.1-P
Bra010432.1-P
Bra010705.1-P
Bra010869.1-P
Bra010919.1-P
Bra010950.1-P
Bra010951.1-P
Bra011768.1-P
Bra012747.1-P
Bra013810.1-P
Bra013811.1-P
Bra013873.1-P
Bra014057.1-P
Bra014190.1-P
Bra014239.1-P
Bra014273.1-P
Bra014335.1-P
Bra014336.1-P
Bra014533.1-P
Bra014558.1-P
Bra014869.1-P
Bra014964.1-P
Bra015172.1-P
Bra015563.1-P
Bra015678.1-P
Bra016192.1-P
Bra016284.1-P
Bra016718.1-P
Bra016719.1-P
Bra016797.1-P
Bra017181.1-P
Bra017223.1-P
Bra018446.1-P
Bra018821.1-P
Bra018911.1-P
Bra019183.1-P
Bra019223.1-P
Bra019736.1-P
Bra019828.1-P
Bra020158.1-P
Bra021161.1-P
Bra021162.1-P
Bra021317.1-P
Bra021487.1-P
Bra021681.1-P
Bra022433.1-P
Bra023593.1-P
Bra023598.1-P
Bra024691.1-P
Bra025380.1-P
Bra026415.1-P
Bra027078.1-P
Bra027189.1-P
Bra028150.1-P
Bra028320.1-P
Bra028455.1-P
Bra028736.1-P
Bra028759.1-P
Bra028932.1-P
Bra028970.1-P
Bra029250.1-P
Bra029588.1-P
Bra029708.1-P
Bra029783.1-P
Bra030248.1-P
Bra030271.1-P
Bra031402.1-P
Bra031558.1-P
Bra032761.1-P
Bra032908.1-P
Bra033089.1-P
Bra033944.1-P
Bra035006.1-P
Bra035582.1-P
Bra035890.1-P
Bra036691.1-P
Bra037210.1-P
Bra037296.1-P
Bra037639.1-P
Bra037640.1-P
Bra038217.1-P
Bra038534.1-P
Bra039117.1-P
Bra039138.1-P
Bra039167.1-P
Bra040427.1-P
Bra040518.1-P
Bra040749.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G26630.1 Bra015563.1-P AT1G07220.1 25387881
AT4G26630.1 Bra031558.1-P AT1G07220.1 25387881
AT4G26630.1 Bra018446.1-P AT1G10320.1 25387881
AT4G26630.1 Bra016797.1-P AT1G12030.1 25387881
AT4G26630.1 Bra019736.1-P AT1G12030.1 25387881
AT4G26630.1 Bra019828.1-P AT1G13380.1 25387881
AT4G26630.1 Bra016718.1-P AT1G13930.1 25387881
AT4G26630.1 Bra016719.1-P AT1G13930.1 25387881
AT4G26630.1 Bra010950.1-P AT1G24300.1 25387881
AT4G26630.1 Bra010951.1-P AT1G24300.1 25387881
AT4G26630.1 Bra010919.1-P AT1G27752.1 25387881
AT4G26630.1 Bra010869.1-P AT1G28420.1 25387881
AT4G26630.1 Bra032908.1-P AT1G28420.1 25387881
AT4G26630.1 Bra016284.1-P AT1G35350.1 25387881
AT4G26630.1 Bra024691.1-P AT1G35350.1 25387881
AT4G26630.1 Bra014057.1-P AT1G47128.1 25387881
AT4G26630.1 Bra040749.1-P AT1G47128.1 25387881
AT4G26630.1 Bra014190.1-P AT1G49470.1 25387881
AT4G26630.1 Bra018821.1-P AT1G49980.1 25387881
AT4G26630.1 Bra014239.1-P AT1G50140.1 25387881
AT4G26630.1 Bra014273.1-P AT1G51310.1 25387881
AT4G26630.1 Bra018911.1-P AT1G51460.1 25387881
AT4G26630.1 Bra021317.1-P AT1G61730.1 25387881
AT4G26630.1 Bra027078.1-P AT1G61730.1 25387881
AT4G26630.1 Bra031402.1-P AT1G61730.1 25387881
AT4G26630.1 Bra004249.1-P AT1G67720.1 25387881
AT4G26630.1 Bra004300.1-P AT1G68360.1 25387881
AT4G26630.1 Bra033944.1-P AT1G68360.1 25387881
AT4G26630.1 Bra003946.1-P AT1G70710.1 25387881
AT4G26630.1 Bra016192.1-P AT1G70710.1 25387881
AT4G26630.1 Bra008229.1-P AT1G75920.1 25387881
AT4G26630.1 Bra014533.1-P AT1G75920.1 25387881
AT4G26630.1 Bra015678.1-P AT1G77300.1 25387881
AT4G26630.1 Bra014335.1-P AT2G01240.1 25387881
AT4G26630.1 Bra014336.1-P AT2G01240.1 25387881
AT4G26630.1 Bra015172.1-P AT2G05920.1 25387881
AT4G26630.1 Bra029783.1-P AT2G06990.1 25387881
AT4G26630.1 Bra037210.1-P AT2G13560.1 25387881
AT4G26630.1 Bra037296.1-P AT2G16600.1 25387881
AT4G26630.1 Bra009665.1-P AT2G17110.1 25387881
AT4G26630.1 Bra036691.1-P AT2G20208.1 25387881
AT4G26630.1 Bra030248.1-P AT2G22300.1 25387881
AT4G26630.1 Bra038534.1-P AT2G22300.1 25387881
AT4G26630.1 Bra017223.1-P AT2G36810.1 25387881
AT4G26630.1 Bra017181.1-P AT2G37520.1 25387881
AT4G26630.1 Bra014558.1-P AT2G42740.1 25387881
AT4G26630.1 Bra000357.1-P AT2G44640.1 25387881
AT4G26630.1 Bra004852.1-P AT2G44640.1 25387881
AT4G26630.1 Bra004853.1-P AT2G44650.1 25387881
AT4G26630.1 Bra037640.1-P AT2G44650.1 25387881
AT4G26630.1 Bra000358.1-P AT2G44670.1 25387881
AT4G26630.1 Bra004855.1-P AT2G44670.1 25387881
AT4G26630.1 Bra037639.1-P AT2G44670.1 25387881
AT4G26630.1 Bra032761.1-P AT2G47430.1 25387881
AT4G26630.1 Bra004420.1-P AT2G47980.1 25387881
AT4G26630.1 Bra021487.1-P AT3G01180.1 25387881
AT4G26630.1 Bra039138.1-P AT3G01180.1 25387881
AT4G26630.1 Bra039117.1-P AT3G01460.1 25387881
AT4G26630.1 Bra040518.1-P AT3G01460.1 25387881
AT4G26630.1 Bra039167.1-P AT3G02260.1 25387881
AT4G26630.1 Bra029588.1-P AT3G06560.1 25387881
AT4G26630.1 Bra029708.1-P AT3G08670.1 25387881
AT4G26630.1 Bra001301.1-P AT3G09670.1 25387881
AT4G26630.1 Bra021161.1-P AT3G16130.1 25387881
AT4G26630.1 Bra021162.1-P AT3G16130.1 25387881
AT4G26630.1 Bra027189.1-P AT3G16130.1 25387881
AT4G26630.1 Bra022433.1-P AT3G19553.1 25387881
AT4G26630.1 Bra038217.1-P AT3G19553.1 25387881
AT4G26630.1 Bra014964.1-P AT3G24180.1 25387881
AT4G26630.1 Bra028320.1-P AT3G24180.1 25387881
AT4G26630.1 Bra025380.1-P AT3G29170.1 25387881
AT4G26630.1 Bra033089.1-P AT3G29170.1 25387881
AT4G26630.1 Bra021681.1-P AT3G44310.1 25387881
AT4G26630.1 Bra023598.1-P AT3G44310.1 25387881
AT4G26630.1 Bra028932.1-P AT3G44310.1 25387881
AT4G26630.1 Bra035006.1-P AT3G44310.1 25387881
AT4G26630.1 Bra003294.1-P AT3G57660.1 25387881
AT4G26630.1 Bra007345.1-P AT3G57660.1 25387881
AT4G26630.1 Bra007733.1-P AT3G63190.1 25387881
AT4G26630.1 Bra040427.1-P AT3G63190.1 25387881
AT4G26630.1 Bra014869.1-P AT4G11810.1 25387881
AT4G26630.1 Bra012747.1-P AT4G15960.1 25387881
AT4G26630.1 Bra013810.1-P AT4G24520.1 25387881
AT4G26630.1 Bra013811.1-P AT4G24520.1 25387881
AT4G26630.1 Bra019223.1-P AT4G24520.1 25387881
AT4G26630.1 Bra013873.1-P AT4G25210.1 25387881
AT4G26630.1 Bra019183.1-P AT4G25210.1 25387881
AT4G26630.1 Bra010432.1-P AT4G26630.1 25387881
AT4G26630.1 Bra026415.1-P AT4G26630.1 25387881
AT4G26630.1 Bra011768.1-P AT4G37460.1 25387881
AT4G26630.1 Bra010705.1-P AT4G39100.1 25387881
AT4G26630.1 Bra001340.1-P AT5G01570.1 25387881
AT4G26630.1 Bra001962.1-P AT5G01570.1 25387881
AT4G26630.1 Bra005852.1-P AT5G05410.1 18552202
AT4G26630.1 Bra009112.1-P AT5G05410.1 18552202
AT4G26630.1 Bra028759.1-P AT5G05410.1 18552202
AT4G26630.1 Bra009182.1-P AT5G06300.1 25387881
AT4G26630.1 Bra028736.1-P AT5G06300.1 25387881
AT4G26630.1 Bra008756.1-P AT5G14460.1 25387881
AT4G26630.1 Bra008661.1-P AT5G15970.1 25387881
AT4G26630.1 Bra006382.1-P AT5G17020.1 25387881
AT4G26630.1 Bra008580.1-P AT5G17020.1 25387881
AT4G26630.1 Bra023593.1-P AT5G17020.1 25387881
AT4G26630.1 Bra009683.1-P AT5G23430.1 25387881
AT4G26630.1 Bra028150.1-P AT5G37790.1 25387881
AT4G26630.1 Bra028455.1-P AT5G40340.1 25387881
AT4G26630.1 Bra030271.1-P AT5G44220.1 25387881
AT4G26630.1 Bra003012.1-P AT5G54140.1 25387881
AT4G26630.1 Bra020158.1-P AT5G54140.1 25387881
AT4G26630.1 Bra028970.1-P AT5G55580.1 25387881
AT4G26630.1 Bra002880.1-P AT5G55660.1 25387881
AT4G26630.1 Bra035582.1-P AT5G55660.1 25387881
AT4G26630.1 Bra029250.1-P AT5G62560.1 25387881
AT4G26630.1 Bra035890.1-P AT5G62560.1 25387881
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX97358 Canola nucleus 73.03 68.1
AT4G26630.1 Thale cress nucleus 34.13 50.59
Bra026415.1-P Field mustard nucleus 35.63 48.26
VIT_19s0015g00430.t01 Wine grape nucleus 23.08 43.57
Bra035582.1-P Field mustard nucleus 28.21 40.18
Bra002880.1-P Field mustard endoplasmic reticulum 29.44 38.5
Solyc07g065490.2.1 Tomato nucleus 20.87 37.22
KRG98507 Soybean nucleus 22.9 35.24
PGSC0003DMT400057390 Potato extracellular, nucleus 21.22 35.14
KRH46360 Soybean nucleus 22.55 34.46
PGSC0003DMT400037344 Potato endoplasmic reticulum, vacuole 10.34 33.62
KRG98502 Soybean nucleus 21.57 33.42
Bra029213.1-P Field mustard nucleus 8.13 32.62
Solyc10g006000.2.1 Tomato nucleus 15.74 32.13
KRH46364 Soybean nucleus 22.72 31.85
Bra019559.1-P Field mustard nucleus 11.41 30.86
Bra038644.1-P Field mustard nucleus 12.29 28.37
EER91265 Sorghum nucleus 16.09 28.22
Zm00001d013757_P010 Maize nucleus 15.3 26.49
Zm00001d033159_P001 Maize nucleus 10.26 25.95
Bra035837.1-P Field mustard nucleus 12.47 25.68
Bra027748.1-P Field mustard nucleus 3.98 25.57
Os03t0596900-01 Rice nucleus 15.65 25.18
TraesCS4B01G148100.1 Wheat nucleus 15.03 17.49
HORVU4Hr1G035250.1 Barley nucleus 15.21 17.36
TraesCS4A01G137900.1 Wheat nucleus 14.94 17.28
TraesCS4D01G153300.1 Wheat nucleus 15.3 17.27
OQU91413 Sorghum nucleus 12.56 10.51
Protein Annotations
Gene3D:2.130.10.10MapMan:35.2EnsemblPlantsGene:Bra010432EnsemblPlants:Bra010432.1EnsemblPlants:Bra010432.1-Pncoils:Coil
GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
UniProt:M4D1T2PFAM:PF00400PFscan:PS50082PFscan:PS50294PANTHER:PTHR43991PANTHER:PTHR43991:SF5
SMART:SM00320SUPFAM:SSF109715SUPFAM:SSF50978UniParc:UPI000254585FInterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeat
InterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg:::
Description
AT5G56190 (E=1e-175) | WD-40 repeat family protein
Coordinates
chrA08:+:14494239..14501494
Molecular Weight (calculated)
125857.0 Da
IEP (calculated)
4.930
GRAVY (calculated)
-1.079
Length
1131 amino acids
Sequence
(BLAST)
0001: MGEEDTKATV EPTATDTSSL EKSSEEKAGG KETHEEPKKG EEKAAEPEKM EIDAEIKKDE ELVVKSNEEV AGTDKMEEDV TVTKDEGQAE ATKMDEDANG
0101: QKEQTDDGVS GGGAVEDTVM KENVESNNAK DDEKEESITE ADQNKAGKES EEDVKNEGDK ANGTKDEKAG DIEEEDKKVE TVDENNKEQN KEEDLAEEGK
0201: EEEDKEVEKA KVEDEERSED ENDNEQVESQ PAKEDEKEET NDDKEDEKEK NKSSKKRGKG KSSGEKIRKK TKDEEEKKDS EPKTPFSDRP VRERKSVERL
0301: VAVIDTDSSK EFRIEKGPGA YLKDIPSVAY KVTRKKSDET LKLLHTILFG GRRGKAPQVK TNILSFSGFV WHGNEEKAKE KIKEKFDKCI KDKLVEFCEM
0401: FDIHVTKATT KEDIVTKLFE FLEKPHAKGD APASEKEKSS KGAKRKRTPK KSSPAAVTSS SKRSAKSQRK SEEGTKAAKK SLALSEDESE EEKEEEKQEK
0501: EQKSAEEEEN ENGIPDKSED EAPQPSESEE KDESEEEETP KKKKKRGSKL SAEKKESAGR ARNKKASVAA KASPPEKVTQ KRSSAKRKKT DDDSDTSPKA
0601: SSKRKKSEKA TKASTSTPSK SASKEKPEVK GAGKGKEKTK GPSDKVLKNA IIKILKRVDF NTATFTDIIK ELDIVQFSQY PSSGSRGSQC PVNMSGHHGE
0701: EAEDEHMEDD DTLGADFENL MCSADTIASH APNRKDIQGI SWDKLSLTRE EYRKSRLQSY RNYENIPNSG EASGKDCLDS EKGSSFYMFK KNFRSVTPTI
0801: LHFQLRELVW ATSNHDVYLM CNNSITHWST LTSSRDEVLD LAGLVTPSEE HPGSLLEGFS KTQVSSLAVK DGMVVAGGFS GELICKHLDR PGVSFCYRLT
0901: SEENAITNSV NIHRNSSGAL HFMASSNDGG VRNFDMETYQ LVQHFHYPWP VNHSSVSPDG KLVTILGDDP DGLLVDSNNG ETVGRLYGHL DYSFASAWHP
1001: DGMTFATGNQ DKTCRVWDVR NLSKSVAVLK GNLGAIRSIK FTSDGQYMAM AEAADFVHIY NTKTGYMKEQ EIDFFGEISG ISFSPDTESL FIGVYDRSYG
1101: SLMEFARERV HNTFQFHISI IQLGAYGMSC V
Best Arabidopsis Sequence Match ( AT4G26630.1 )
(BLAST)
001: MGEDTKATIE PTANKTTSLE KPSEAMAGKE NAGGKETQEL AKDEDMAEPD NMEIDAQIKK DDEKAETEDK ESEVKKNEDN AETQKMEEKV EVTKDEGQAE
101: ATNMDEDADG KKEQTDDGVS VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD IKEEGTLVDE DKGTDMDEKV
201: ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN
301: KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW
401: HGDEKKAKEK VKEKLEKCTK EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK RTPKKTSPTA GSSSSKRSAK
501: SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR
601: ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF
701: TDILKELAKE FTEDLTPRKS SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:Q9SUA1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.