Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 4
- golgi 3
- extracellular 2
- mitochondrion 1
- plastid 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44404 | Canola | golgi, nucleus, plasma membrane | 97.5 | 97.5 |
| CDY04059 | Canola | golgi, plasma membrane, plastid | 96.67 | 96.67 |
| AT3G29170.1 | Thale cress | golgi, plasma membrane, plastid | 90.83 | 90.08 |
| Bra025380.1-P | Field mustard | golgi, plasma membrane, plastid | 86.67 | 86.67 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 30.0 | 78.26 |
| Os11t0132400-01 | Rice | vacuole | 35.0 | 77.78 |
| PGSC0003DMT400057016 | Potato | golgi, plasma membrane, plastid | 74.17 | 75.42 |
| Solyc07g065740.2.1 | Tomato | golgi, plasma membrane, plastid | 72.5 | 73.73 |
| KRH11067 | Soybean | cytosol | 70.0 | 72.41 |
| KRH21204 | Soybean | cytosol | 69.17 | 71.55 |
| TraesCS7B01G294700.1 | Wheat | cytosol, plasma membrane, vacuole | 65.83 | 70.54 |
| TraesCS5D01G147900.1 | Wheat | cytosol, plasma membrane, vacuole | 65.83 | 70.54 |
| TraesCS5B01G143200.1 | Wheat | cytosol, plasma membrane, vacuole | 65.83 | 70.54 |
| TraesCS5A01G144100.1 | Wheat | cytosol, plasma membrane, vacuole | 65.83 | 70.54 |
| TraesCS7A01G392700.1 | Wheat | cytosol, plasma membrane, vacuole | 64.17 | 68.75 |
| Zm00001d029567_P001 | Maize | golgi, plastid, vacuole | 65.83 | 67.52 |
| EER92102 | Sorghum | cytosol, golgi, vacuole | 65.0 | 66.67 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, plasma membrane | 64.17 | 66.38 |
| OQU90188 | Sorghum | cytosol, extracellular, plasma membrane | 63.33 | 64.41 |
| HORVU5Hr1G045930.1 | Barley | cytosol, mitochondrion, nucleus | 65.0 | 43.09 |
| Os12t0129000-01 | Rice | plasma membrane | 67.5 | 38.57 |
Protein Annotations
| EnsemblPlants:Bra033089.1 | EnsemblPlants:Bra033089.1-P | EnsemblPlantsGene:Bra033089 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF872_TM | PANTHER:PTHR15664 | PANTHER:PTHR15664:SF0 | PFAM:PF05915 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002546E4E | UniProt:M4EWA5 | MapMan:35.2 | : | : | : |
Description
AT3G29170 (E=4e-051) | unknown protein
Coordinates
chrA02:+:21474340..21475602
Molecular Weight (calculated)
13710.4 Da
IEP (calculated)
5.091
GRAVY (calculated)
0.030
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRNVRYA QLPGDEDDED YANGGVRRDF DPRFDYTPKA FDRVPWKSIA LALFLLFLGC LLLLLTVFIF TGHMEGDSSQ GYALLVLGIL TFLPGFYETR
101: IAYYSWRGAE GYRFAAIPSY
101: IAYYSWRGAE GYRFAAIPSY
001: MASRRSVRYA QLPGDEDDEG YGNGVGERRD FDPRFDYSPK AFDRVPWKSI ALAVFLLFLG CLLLLLSFFI FIGHMEGDSS QGYALLVLGI LTFLPGFYET
101: RIAYYSWRGA EGYRFAAIPS Y
101: RIAYYSWRGA EGYRFAAIPS Y
Arabidopsis Description
At3g29170 [Source:UniProtKB/TrEMBL;Acc:Q9LVP2]
SUBAcon: [plasma membrane,golgi,plastid]
SUBAcon: [plasma membrane,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.