Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G143200.1 | Wheat | cytosol, plasma membrane, vacuole | 99.11 | 99.11 |
| TraesCS5D01G147900.1 | Wheat | cytosol, plasma membrane, vacuole | 99.11 | 99.11 |
| TraesCS7A01G392700.1 | Wheat | cytosol, plasma membrane, vacuole | 93.75 | 93.75 |
| Os11t0132400-01 | Rice | vacuole | 42.86 | 88.89 |
| Zm00001d029567_P001 | Maize | golgi, plastid, vacuole | 83.04 | 79.49 |
| EER92102 | Sorghum | cytosol, golgi, vacuole | 82.14 | 78.63 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 31.25 | 76.09 |
| Solyc07g065740.2.1 | Tomato | golgi, plasma membrane, plastid | 74.11 | 70.34 |
| PGSC0003DMT400057016 | Potato | golgi, plasma membrane, plastid | 72.32 | 68.64 |
| CDY44404 | Canola | golgi, nucleus, plasma membrane | 71.43 | 66.67 |
| KRH11067 | Soybean | cytosol | 68.75 | 66.38 |
| Bra033089.1-P | Field mustard | golgi, nucleus, plasma membrane | 70.54 | 65.83 |
| CDY04059 | Canola | golgi, plasma membrane, plastid | 70.54 | 65.83 |
| KRH21204 | Soybean | cytosol | 67.86 | 65.52 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, plasma membrane | 66.07 | 63.79 |
| CDX85252 | Canola | golgi, plasma membrane, plastid | 66.96 | 63.03 |
| AT3G29170.1 | Thale cress | golgi, plasma membrane, plastid | 67.86 | 62.81 |
| Bra025380.1-P | Field mustard | golgi, plasma membrane, plastid | 66.07 | 61.67 |
| CDX86385 | Canola | golgi, plasma membrane, plastid | 66.07 | 61.67 |
| HORVU5Hr1G045930.1 | Barley | cytosol, mitochondrion, nucleus | 99.11 | 61.33 |
| Os12t0129000-01 | Rice | plasma membrane | 84.82 | 45.24 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G144100.1 | EnsemblPlantsGene:TraesCS5A01G144100 | InterPro:DUF872_TM | PANTHER:PTHR15664 | PANTHER:PTHR15664:SF0 | PFAM:PF05915 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:320212700..320213566
Molecular Weight (calculated)
12819.4 Da
IEP (calculated)
8.792
GRAVY (calculated)
0.116
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARRNIPYS VLPTEDRDED NVDRRFTYTP KSLRRIPWKS IALALFLLFL GSSLLFLSYF ISTGHMEGDS SQVYGLLFLG ILAFLPGFYE TRVAYYSWRG
101: APGFTFAAIP DY
101: APGFTFAAIP DY
001: MASRRSVRYA QLPGDEDDEG YGNGVGERRD FDPRFDYSPK AFDRVPWKSI ALAVFLLFLG CLLLLLSFFI FIGHMEGDSS QGYALLVLGI LTFLPGFYET
101: RIAYYSWRGA EGYRFAAIPS Y
101: RIAYYSWRGA EGYRFAAIPS Y
Arabidopsis Description
At3g29170 [Source:UniProtKB/TrEMBL;Acc:Q9LVP2]
SUBAcon: [plasma membrane,golgi,plastid]
SUBAcon: [plasma membrane,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.