Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86385 | Canola | golgi, plasma membrane, plastid | 92.44 | 91.67 |
| CDY04059 | Canola | golgi, plasma membrane, plastid | 90.76 | 90.0 |
| CDY44404 | Canola | golgi, nucleus, plasma membrane | 89.08 | 88.33 |
| AT3G29170.1 | Thale cress | golgi, plasma membrane, plastid | 88.24 | 86.78 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 29.41 | 76.09 |
| Os11t0132400-01 | Rice | vacuole | 34.45 | 75.93 |
| Solyc07g065740.2.1 | Tomato | golgi, plasma membrane, plastid | 71.43 | 72.03 |
| KRH11067 | Soybean | cytosol | 69.75 | 71.55 |
| PGSC0003DMT400057016 | Potato | golgi, plasma membrane, plastid | 70.59 | 71.19 |
| KRH21204 | Soybean | cytosol | 68.91 | 70.69 |
| Zm00001d029567_P001 | Maize | golgi, plastid, vacuole | 66.39 | 67.52 |
| EER92102 | Sorghum | cytosol, golgi, vacuole | 66.39 | 67.52 |
| TraesCS5A01G144100.1 | Wheat | cytosol, plasma membrane, vacuole | 63.03 | 66.96 |
| TraesCS5B01G143200.1 | Wheat | cytosol, plasma membrane, vacuole | 63.03 | 66.96 |
| TraesCS5D01G147900.1 | Wheat | cytosol, plasma membrane, vacuole | 63.03 | 66.96 |
| TraesCS7B01G294700.1 | Wheat | cytosol, plasma membrane, vacuole | 63.03 | 66.96 |
| TraesCS7A01G392700.1 | Wheat | cytosol, plasma membrane, vacuole | 61.34 | 65.18 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, plasma membrane | 62.18 | 63.79 |
| OQU90188 | Sorghum | cytosol, extracellular, plasma membrane | 60.5 | 61.02 |
| HORVU5Hr1G045930.1 | Barley | cytosol, mitochondrion, nucleus | 62.18 | 40.88 |
| Os12t0129000-01 | Rice | plasma membrane | 66.39 | 37.62 |
Protein Annotations
| EnsemblPlants:CDX85252 | EnsemblPlantsGene:GSBRNA2T00142893001 | GO:A0A078D822 | InterPro:DUF872_TM | PANTHER:PTHR15664 | PANTHER:PTHR15664:SF0 |
| PFAM:PF05915 | ProteinID:CDX85252 | ProteinID:CDX85252.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EAFA03 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC07g25630D
Coordinates
chrLK031841:-:614971..616323
Molecular Weight (calculated)
13503.1 Da
IEP (calculated)
5.077
GRAVY (calculated)
0.054
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRSVRYA QLPGDDDEDY ADGGGRRDFD PRFDYTPKAF DRVPWKSIAL AVFLLFLGCL LLLLAVFIFT GHMEGDSSQG YALLVLGFLT FLPGFYETRI
101: AYYSWRGAEG YRFAAIPSY
101: AYYSWRGAEG YRFAAIPSY
001: MASRRSVRYA QLPGDEDDEG YGNGVGERRD FDPRFDYSPK AFDRVPWKSI ALAVFLLFLG CLLLLLSFFI FIGHMEGDSS QGYALLVLGI LTFLPGFYET
101: RIAYYSWRGA EGYRFAAIPS Y
101: RIAYYSWRGA EGYRFAAIPS Y
Arabidopsis Description
At3g29170 [Source:UniProtKB/TrEMBL;Acc:Q9LVP2]
SUBAcon: [plasma membrane,golgi,plastid]
SUBAcon: [plasma membrane,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.