Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 37.07 | 93.48 |
| Os11t0132400-01 | Rice | vacuole | 37.93 | 81.48 |
| KRH11067 | Soybean | cytosol | 68.1 | 68.1 |
| KRH21204 | Soybean | cytosol | 68.1 | 68.1 |
| TraesCS7B01G294700.1 | Wheat | cytosol, plasma membrane, vacuole | 65.52 | 67.86 |
| Solyc07g065740.2.1 | Tomato | golgi, plasma membrane, plastid | 68.97 | 67.8 |
| PGSC0003DMT400057016 | Potato | golgi, plasma membrane, plastid | 68.1 | 66.95 |
| TraesCS7A01G392700.1 | Wheat | cytosol, plasma membrane, vacuole | 63.79 | 66.07 |
| TraesCS5D01G147900.1 | Wheat | cytosol, plasma membrane, vacuole | 63.79 | 66.07 |
| TraesCS5B01G143200.1 | Wheat | cytosol, plasma membrane, vacuole | 63.79 | 66.07 |
| TraesCS5A01G144100.1 | Wheat | cytosol, plasma membrane, vacuole | 63.79 | 66.07 |
| AT3G29170.1 | Thale cress | golgi, plasma membrane, plastid | 68.1 | 65.29 |
| Bra033089.1-P | Field mustard | golgi, nucleus, plasma membrane | 66.38 | 64.17 |
| Zm00001d029567_P001 | Maize | golgi, plastid, vacuole | 64.66 | 64.1 |
| CDY44404 | Canola | golgi, nucleus, plasma membrane | 65.52 | 63.33 |
| CDX86385 | Canola | golgi, plasma membrane, plastid | 65.52 | 63.33 |
| Bra025380.1-P | Field mustard | golgi, plasma membrane, plastid | 65.52 | 63.33 |
| EER92102 | Sorghum | cytosol, golgi, vacuole | 63.79 | 63.25 |
| CDY04059 | Canola | golgi, plasma membrane, plastid | 64.66 | 62.5 |
| CDX85252 | Canola | golgi, plasma membrane, plastid | 63.79 | 62.18 |
| OQU90188 | Sorghum | cytosol, extracellular, plasma membrane | 60.34 | 59.32 |
| HORVU5Hr1G045930.1 | Barley | cytosol, mitochondrion, nucleus | 63.79 | 40.88 |
| Os12t0129000-01 | Rice | plasma membrane | 67.24 | 37.14 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P10980_001 | EnsemblPlants:GSMUA_Achr11T10980_001 | EnsemblPlantsGene:GSMUA_Achr11G10980_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF872_TM | PANTHER:PTHR15664 | PANTHER:PTHR15664:SF0 | PFAM:PF05915 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI00029612C0 | UniProt:M0RR78 | MapMan:35.2 | : | : | : |
Description
Putative UPF0414 transmembrane protein C20orf30 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr11G10980_001]
Coordinates
chr11:-:8707935..8711342
Molecular Weight (calculated)
13185.0 Da
IEP (calculated)
7.756
GRAVY (calculated)
0.071
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRHVQYT PLALDDMDEG HGMLKEEDLR FAYNPKALDR VPWKSITLAL FLLALGSALI IMSFFIFTGH MEGERSQAYG LLTLGILAFL PGFYETRIAY
101: YSWRGAPGYR FSSIPN
101: YSWRGAPGYR FSSIPN
001: MASRRSVRYA QLPGDEDDEG YGNGVGERRD FDPRFDYSPK AFDRVPWKSI ALAVFLLFLG CLLLLLSFFI FIGHMEGDSS QGYALLVLGI LTFLPGFYET
101: RIAYYSWRGA EGYRFAAIPS Y
101: RIAYYSWRGA EGYRFAAIPS Y
Arabidopsis Description
At3g29170 [Source:UniProtKB/TrEMBL;Acc:Q9LVP2]
SUBAcon: [plasma membrane,golgi,plastid]
SUBAcon: [plasma membrane,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.