Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0132400-01 | Rice | vacuole | 25.71 | 100.0 |
| Zm00001d029567_P001 | Maize | golgi, plastid, vacuole | 48.1 | 86.32 |
| EER92102 | Sorghum | cytosol, golgi, vacuole | 48.1 | 86.32 |
| TraesCS7B01G294700.1 | Wheat | cytosol, plasma membrane, vacuole | 45.71 | 85.71 |
| TraesCS5D01G147900.1 | Wheat | cytosol, plasma membrane, vacuole | 45.24 | 84.82 |
| TraesCS5B01G143200.1 | Wheat | cytosol, plasma membrane, vacuole | 45.24 | 84.82 |
| TraesCS5A01G144100.1 | Wheat | cytosol, plasma membrane, vacuole | 45.24 | 84.82 |
| TraesCS7A01G392700.1 | Wheat | cytosol, plasma membrane, vacuole | 44.76 | 83.93 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 17.62 | 80.43 |
| CDY04059 | Canola | golgi, plasma membrane, plastid | 39.52 | 69.17 |
| KRH11067 | Soybean | cytosol | 38.1 | 68.97 |
| Solyc07g065740.2.1 | Tomato | golgi, plasma membrane, plastid | 38.57 | 68.64 |
| CDY44404 | Canola | golgi, nucleus, plasma membrane | 39.05 | 68.33 |
| KRH21204 | Soybean | cytosol | 37.62 | 68.1 |
| Bra033089.1-P | Field mustard | golgi, nucleus, plasma membrane | 38.57 | 67.5 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, plasma membrane | 37.14 | 67.24 |
| PGSC0003DMT400057016 | Potato | golgi, plasma membrane, plastid | 37.62 | 66.95 |
| CDX85252 | Canola | golgi, plasma membrane, plastid | 37.62 | 66.39 |
| CDX86385 | Canola | golgi, plasma membrane, plastid | 37.14 | 65.0 |
| Bra025380.1-P | Field mustard | golgi, plasma membrane, plastid | 37.14 | 65.0 |
| AT3G29170.1 | Thale cress | golgi, plasma membrane, plastid | 37.14 | 64.46 |
| HORVU5Hr1G045930.1 | Barley | cytosol, mitochondrion, nucleus | 45.71 | 53.04 |
Protein Annotations
| EnsemblPlants:Os12t0129000-01 | EnsemblPlantsGene:Os12g0129000 | EntrezGene:9272112 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF872_TM | PANTHER:PTHR15664 | PANTHER:PTHR15664:SF0 | PFAM:PF05915 | ProteinID:BAH95500.1 | ProteinID:BAT15722.1 |
| RefSeq:XP_015618391.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0001B66554 | UniProt:C7JA51 | MapMan:35.2 |
Description
Uncharacterised protein family UPF0414 domain containing protein. (Os12t0129000-01)
Coordinates
chr12:-:1387551..1391270
Molecular Weight (calculated)
23912.0 Da
IEP (calculated)
11.214
GRAVY (calculated)
-0.535
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNSKKKKIP NPPAYRVSPP PIRRSPRPPP RRDRSPPRRP PARRHRVLRG CHHLLNPASH HPIARWPPSS TVCLLSPLHH RGTSPSRKKR HCTMASRRNV
101: RGYAPLPTED RDDSNLTDDV DLRFTYTPKS LRKIPWKSIA LALFLLLLGC SLLFLSYFIF TGHMEGDNSQ AYGLLFLGIL AFLPGFYETR VAYYSSRGAP
201: GYTFASIPDY
101: RGYAPLPTED RDDSNLTDDV DLRFTYTPKS LRKIPWKSIA LALFLLLLGC SLLFLSYFIF TGHMEGDNSQ AYGLLFLGIL AFLPGFYETR VAYYSSRGAP
201: GYTFASIPDY
001: MASRRSVRYA QLPGDEDDEG YGNGVGERRD FDPRFDYSPK AFDRVPWKSI ALAVFLLFLG CLLLLLSFFI FIGHMEGDSS QGYALLVLGI LTFLPGFYET
101: RIAYYSWRGA EGYRFAAIPS Y
101: RIAYYSWRGA EGYRFAAIPS Y
Arabidopsis Description
At3g29170 [Source:UniProtKB/TrEMBL;Acc:Q9LVP2]
SUBAcon: [plasma membrane,golgi,plastid]
SUBAcon: [plasma membrane,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.