Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025380.1-P | Field mustard | golgi, plasma membrane, plastid | 100.0 | 100.0 |
| CDX85252 | Canola | golgi, plasma membrane, plastid | 91.67 | 92.44 |
| AT3G29170.1 | Thale cress | golgi, plasma membrane, plastid | 87.5 | 86.78 |
| CDY04059 | Canola | golgi, plasma membrane, plastid | 86.67 | 86.67 |
| CDY44404 | Canola | golgi, nucleus, plasma membrane | 85.83 | 85.83 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 29.17 | 76.09 |
| Os11t0132400-01 | Rice | vacuole | 34.17 | 75.93 |
| KRH11067 | Soybean | cytosol | 68.33 | 70.69 |
| KRH21204 | Soybean | cytosol | 67.5 | 69.83 |
| Solyc07g065740.2.1 | Tomato | golgi, plasma membrane, plastid | 68.33 | 69.49 |
| PGSC0003DMT400057016 | Potato | golgi, plasma membrane, plastid | 67.5 | 68.64 |
| Zm00001d029567_P001 | Maize | golgi, plastid, vacuole | 65.0 | 66.67 |
| TraesCS5A01G144100.1 | Wheat | cytosol, plasma membrane, vacuole | 61.67 | 66.07 |
| TraesCS5B01G143200.1 | Wheat | cytosol, plasma membrane, vacuole | 61.67 | 66.07 |
| TraesCS5D01G147900.1 | Wheat | cytosol, plasma membrane, vacuole | 61.67 | 66.07 |
| TraesCS7B01G294700.1 | Wheat | cytosol, plasma membrane, vacuole | 61.67 | 66.07 |
| EER92102 | Sorghum | cytosol, golgi, vacuole | 64.17 | 65.81 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, plasma membrane | 63.33 | 65.52 |
| TraesCS7A01G392700.1 | Wheat | cytosol, plasma membrane, vacuole | 60.0 | 64.29 |
| OQU90188 | Sorghum | cytosol, extracellular, plasma membrane | 60.0 | 61.02 |
| HORVU5Hr1G045930.1 | Barley | cytosol, mitochondrion, nucleus | 61.67 | 40.88 |
| Os12t0129000-01 | Rice | plasma membrane | 65.0 | 37.14 |
Protein Annotations
| EnsemblPlants:CDX86385 | EnsemblPlantsGene:GSBRNA2T00144512001 | GO:A0A078DAW0 | InterPro:DUF872_TM | PANTHER:PTHR15664 | PANTHER:PTHR15664:SF0 |
| PFAM:PF05915 | ProteinID:CDX86385 | ProteinID:CDX86385.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000253FADF |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA06g31020D
Coordinates
chrLK031845:+:1279423..1280854
Molecular Weight (calculated)
13440.1 Da
IEP (calculated)
5.834
GRAVY (calculated)
0.069
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRSVRYA QLPGDDEDYA DGGGGGRRDF DPRFDYTPKA FDRVPWKSIG LAVFLLVLGC LLLLLAVFIF TGHMEGDSSQ GYALLVLGFL TFLPGFYETR
101: IAYYSWRGAE GYRFAAIPSY
101: IAYYSWRGAE GYRFAAIPSY
001: MASRRSVRYA QLPGDEDDEG YGNGVGERRD FDPRFDYSPK AFDRVPWKSI ALAVFLLFLG CLLLLLSFFI FIGHMEGDSS QGYALLVLGI LTFLPGFYET
101: RIAYYSWRGA EGYRFAAIPS Y
101: RIAYYSWRGA EGYRFAAIPS Y
Arabidopsis Description
At3g29170 [Source:UniProtKB/TrEMBL;Acc:Q9LVP2]
SUBAcon: [plasma membrane,golgi,plastid]
SUBAcon: [plasma membrane,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.