Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0132400-01 | Rice | vacuole | 80.43 | 68.52 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, plasma membrane | 93.48 | 37.07 |
| Solyc07g065740.2.1 | Tomato | golgi, plasma membrane, plastid | 82.61 | 32.2 |
| PGSC0003DMT400057016 | Potato | golgi, plasma membrane, plastid | 82.61 | 32.2 |
| TraesCS7B01G294700.1 | Wheat | cytosol, plasma membrane, vacuole | 78.26 | 32.14 |
| TraesCS7A01G392700.1 | Wheat | cytosol, plasma membrane, vacuole | 78.26 | 32.14 |
| TraesCS5D01G147900.1 | Wheat | cytosol, plasma membrane, vacuole | 76.09 | 31.25 |
| TraesCS5B01G143200.1 | Wheat | cytosol, plasma membrane, vacuole | 76.09 | 31.25 |
| TraesCS5A01G144100.1 | Wheat | cytosol, plasma membrane, vacuole | 76.09 | 31.25 |
| KRH11067 | Soybean | cytosol | 78.26 | 31.03 |
| KRH21204 | Soybean | cytosol | 78.26 | 31.03 |
| Zm00001d029567_P001 | Maize | golgi, plastid, vacuole | 78.26 | 30.77 |
| EER92102 | Sorghum | cytosol, golgi, vacuole | 78.26 | 30.77 |
| CDY44404 | Canola | golgi, nucleus, plasma membrane | 78.26 | 30.0 |
| CDY04059 | Canola | golgi, plasma membrane, plastid | 78.26 | 30.0 |
| Bra033089.1-P | Field mustard | golgi, nucleus, plasma membrane | 78.26 | 30.0 |
| AT3G29170.1 | Thale cress | golgi, plasma membrane, plastid | 78.26 | 29.75 |
| OQU90188 | Sorghum | cytosol, extracellular, plasma membrane | 76.09 | 29.66 |
| CDX85252 | Canola | golgi, plasma membrane, plastid | 76.09 | 29.41 |
| CDX86385 | Canola | golgi, plasma membrane, plastid | 76.09 | 29.17 |
| Bra025380.1-P | Field mustard | golgi, plasma membrane, plastid | 76.09 | 29.17 |
| HORVU5Hr1G045930.1 | Barley | cytosol, mitochondrion, nucleus | 76.09 | 19.34 |
| Os12t0129000-01 | Rice | plasma membrane | 80.43 | 17.62 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P05680_001 | EnsemblPlants:GSMUA_Achr10T05680_001 | EnsemblPlantsGene:GSMUA_Achr10G05680_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF872_TM | PANTHER:PTHR15664 | PFAM:PF05915 | TMHMM:TMhelix | UniParc:UPI00029503B8 | UniProt:M0RFP5 |
| MapMan:35.2 | : | : | : | : | : |
Description
UPF0414 transmembrane protein C20orf30 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr10G05680_001]
Coordinates
chr10:+:16162501..16165534
Molecular Weight (calculated)
5138.1 Da
IEP (calculated)
6.578
GRAVY (calculated)
-0.009
Length
46 amino acids
Sequence
(BLAST)
(BLAST)
1: MEGEQSQAYG LLTLGILAFL PGFYETRIAY YSWKGAPGYR FSSIPS
001: MASRRSVRYA QLPGDEDDEG YGNGVGERRD FDPRFDYSPK AFDRVPWKSI ALAVFLLFLG CLLLLLSFFI FIGHMEGDSS QGYALLVLGI LTFLPGFYET
101: RIAYYSWRGA EGYRFAAIPS Y
101: RIAYYSWRGA EGYRFAAIPS Y
Arabidopsis Description
At3g29170 [Source:UniProtKB/TrEMBL;Acc:Q9LVP2]
SUBAcon: [plasma membrane,golgi,plastid]
SUBAcon: [plasma membrane,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.