Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 3
- mitochondrion 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g065740.2.1 | Tomato | golgi, plasma membrane, plastid | 97.46 | 97.46 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 32.2 | 82.61 |
| Os11t0132400-01 | Rice | vacuole | 34.75 | 75.93 |
| AT3G29170.1 | Thale cress | golgi, plasma membrane, plastid | 76.27 | 74.38 |
| Bra033089.1-P | Field mustard | golgi, nucleus, plasma membrane | 75.42 | 74.17 |
| CDY04059 | Canola | golgi, plasma membrane, plastid | 75.42 | 74.17 |
| CDY44404 | Canola | golgi, nucleus, plasma membrane | 73.73 | 72.5 |
| KRH11067 | Soybean | cytosol | 71.19 | 72.41 |
| TraesCS5D01G147900.1 | Wheat | cytosol, plasma membrane, vacuole | 68.64 | 72.32 |
| TraesCS5B01G143200.1 | Wheat | cytosol, plasma membrane, vacuole | 68.64 | 72.32 |
| TraesCS5A01G144100.1 | Wheat | cytosol, plasma membrane, vacuole | 68.64 | 72.32 |
| KRH21204 | Soybean | cytosol | 70.34 | 71.55 |
| TraesCS7B01G294700.1 | Wheat | cytosol, plasma membrane, vacuole | 67.8 | 71.43 |
| CDX85252 | Canola | golgi, plasma membrane, plastid | 71.19 | 70.59 |
| TraesCS7A01G392700.1 | Wheat | cytosol, plasma membrane, vacuole | 66.1 | 69.64 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, plasma membrane | 66.95 | 68.1 |
| Bra025380.1-P | Field mustard | golgi, plasma membrane, plastid | 68.64 | 67.5 |
| CDX86385 | Canola | golgi, plasma membrane, plastid | 68.64 | 67.5 |
| Zm00001d029567_P001 | Maize | golgi, plastid, vacuole | 66.1 | 66.67 |
| EER92102 | Sorghum | cytosol, golgi, vacuole | 65.25 | 65.81 |
| OQU90188 | Sorghum | cytosol, extracellular, plasma membrane | 62.71 | 62.71 |
| HORVU5Hr1G045930.1 | Barley | cytosol, mitochondrion, nucleus | 67.8 | 44.2 |
| Os12t0129000-01 | Rice | plasma membrane | 66.95 | 37.62 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400057016 | EnsemblPlantsGene:PGSC0003DMG400022162 | EntrezGene:102606185 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF872_TM | PANTHER:PTHR15664 | PANTHER:PTHR15664:SF0 | PFAM:PF05915 | PGSC:PGSC0003DMG400022162 | RefSeq:XP_006346117.1 |
| RefSeq:XP_015163644.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00029612B1 | UniProt:M1C082 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022162]
Coordinates
chr7:-:55765311..55768474
Molecular Weight (calculated)
13501.1 Da
IEP (calculated)
7.331
GRAVY (calculated)
-0.069
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRNINYS RLAVDEDDDY YGNSGKRADP RFDYSPKSLD RIPWKSIALA LFLLFLGCLL LLLSYFILSG HMEGESSQAY GLLGLGILTF LPGFYETRIA
101: YYSWRGAQGY RFTAIPEY
101: YYSWRGAQGY RFTAIPEY
001: MASRRSVRYA QLPGDEDDEG YGNGVGERRD FDPRFDYSPK AFDRVPWKSI ALAVFLLFLG CLLLLLSFFI FIGHMEGDSS QGYALLVLGI LTFLPGFYET
101: RIAYYSWRGA EGYRFAAIPS Y
101: RIAYYSWRGA EGYRFAAIPS Y
Arabidopsis Description
At3g29170 [Source:UniProtKB/TrEMBL;Acc:Q9LVP2]
SUBAcon: [plasma membrane,golgi,plastid]
SUBAcon: [plasma membrane,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.