Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- golgi 3
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033089.1-P | Field mustard | golgi, nucleus, plasma membrane | 90.08 | 90.83 |
| CDY04059 | Canola | golgi, plasma membrane, plastid | 89.26 | 90.0 |
| CDY44404 | Canola | golgi, nucleus, plasma membrane | 89.26 | 90.0 |
| CDX85252 | Canola | golgi, plasma membrane, plastid | 86.78 | 88.24 |
| CDX86385 | Canola | golgi, plasma membrane, plastid | 86.78 | 87.5 |
| Bra025380.1-P | Field mustard | golgi, plasma membrane, plastid | 86.78 | 87.5 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 29.75 | 78.26 |
| PGSC0003DMT400057016 | Potato | golgi, plasma membrane, plastid | 74.38 | 76.27 |
| Os11t0132400-01 | Rice | vacuole | 33.88 | 75.93 |
| Solyc07g065740.2.1 | Tomato | golgi, plasma membrane, plastid | 72.73 | 74.58 |
| KRH11067 | Soybean | cytosol | 68.59 | 71.55 |
| KRH21204 | Soybean | cytosol | 67.77 | 70.69 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, plasma membrane | 65.29 | 68.1 |
| TraesCS5A01G144100.1 | Wheat | cytosol, plasma membrane, vacuole | 62.81 | 67.86 |
| TraesCS5B01G143200.1 | Wheat | cytosol, plasma membrane, vacuole | 62.81 | 67.86 |
| TraesCS5D01G147900.1 | Wheat | cytosol, plasma membrane, vacuole | 62.81 | 67.86 |
| TraesCS7B01G294700.1 | Wheat | cytosol, plasma membrane, vacuole | 62.81 | 67.86 |
| TraesCS7A01G392700.1 | Wheat | cytosol, plasma membrane, vacuole | 61.16 | 66.07 |
| Zm00001d029567_P001 | Maize | golgi, plastid, vacuole | 62.81 | 64.96 |
| EER92102 | Sorghum | cytosol, golgi, vacuole | 61.98 | 64.1 |
| OQU90188 | Sorghum | cytosol, extracellular, plasma membrane | 59.5 | 61.02 |
| HORVU5Hr1G045930.1 | Barley | cytosol, mitochondrion, nucleus | 61.98 | 41.44 |
| Os12t0129000-01 | Rice | plasma membrane | 64.46 | 37.14 |
Protein Annotations
| MapMan:35.2 | EntrezGene:822567 | UniProt:A0A178VJ87 | ProteinID:AEE77545.1 | EMBL:AK176694 | EMBL:AK176774 |
| ProteinID:ANM64482.1 | ArrayExpress:AT3G29170 | EnsemblPlantsGene:AT3G29170 | RefSeq:AT3G29170 | TAIR:AT3G29170 | RefSeq:AT3G29170-TAIR-G |
| EnsemblPlants:AT3G29170.1 | TAIR:AT3G29170.1 | EMBL:AY084813 | ProteinID:BAB01994.1 | EMBL:BT028880 | InterPro:DUF872_TM |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_001326507.1 | RefSeq:NP_566844.1 |
| ProteinID:OAP05375.1 | PFAM:PF05915 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR15664 |
| PANTHER:PTHR15664:SF0 | UniProt:Q9LVP2 | TMHMM:TMhelix | UniParc:UPI000005EC59 | SEG:seg | : |
Description
At3g29170 [Source:UniProtKB/TrEMBL;Acc:Q9LVP2]
Coordinates
chr3:-:11135951..11138010
Molecular Weight (calculated)
13758.4 Da
IEP (calculated)
5.105
GRAVY (calculated)
0.064
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRRSVRYA QLPGDEDDEG YGNGVGERRD FDPRFDYSPK AFDRVPWKSI ALAVFLLFLG CLLLLLSFFI FIGHMEGDSS QGYALLVLGI LTFLPGFYET
101: RIAYYSWRGA EGYRFAAIPS Y
101: RIAYYSWRGA EGYRFAAIPS Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.