Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90107 | Canola | nucleus, plastid | 97.13 | 98.69 |
| AT1G27752.1 | Thale cress | nucleus, plastid | 72.65 | 83.96 |
| KRH61398 | Soybean | plastid | 45.29 | 54.21 |
| KRH52085 | Soybean | plastid | 44.6 | 53.0 |
| Solyc04g077930.2.1 | Tomato | nucleus, plastid | 45.89 | 50.88 |
| PGSC0003DMT400055441 | Potato | cytosol | 35.78 | 49.59 |
| GSMUA_Achr3P30080_001 | Banana | plastid | 40.04 | 48.21 |
| VIT_18s0001g09190.t01 | Wine grape | nucleus, plastid | 6.84 | 47.92 |
| Os03t0205000-01 | Rice | plastid | 41.03 | 44.66 |
| Zm00001d028088_P003 | Maize | plastid | 39.84 | 41.15 |
| EER92676 | Sorghum | plastid | 40.24 | 41.13 |
| TraesCS4B01G257700.1 | Wheat | plastid | 39.54 | 37.93 |
| HORVU4Hr1G069920.9 | Barley | cytosol | 35.28 | 37.91 |
| TraesCS4D01G257600.1 | Wheat | plastid | 39.64 | 37.28 |
| TraesCS4A01G047100.1 | Wheat | cytosol | 35.08 | 35.54 |
Protein Annotations
| EnsemblPlants:Bra010919.1 | EnsemblPlants:Bra010919.1-P | EnsemblPlantsGene:Bra010919 | Gene3D:1.10.8.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:CUE | InterPro:IPR003892 | InterPro:UBA-like_sf | PFAM:PF02845 | PFscan:PS51140 |
| SEG:seg | SMART:SM00546 | SUPFAM:SSF46934 | UniParc:UPI000254588A | UniProt:M4D366 | MapMan:35.2 |
Description
AT1G27752 (E=0.0) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); Has 330 Blast hits to 312 proteins in 96 species: Archae - 0; Bacteria - 26; Metazoa - 143; Fungi - 77; Plants - 32; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Coordinates
chrA08:-:17107104..17111995
Molecular Weight (calculated)
111822.0 Da
IEP (calculated)
5.752
GRAVY (calculated)
-0.618
Length
1009 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSHRRSNQHD ESARYIPKGQ QKFVPKSFNP TPPPPASSST AFPVSLSSSL RQSDSSSRAP APGGSRVRIG DQGQLVAQGG GSFVNYLPQD EAVAAGLGPE
0101: DGGLDPVESQ GVVDLLNREL ARLLKLNPRL FWREVASDAS LHDFLDSFLQ FRSRWYDFPF HGVKGIVAGV IVGEIELCRR VFMVLYRISS HRDPGARAAD
0201: SLSQKDHEVL LQEKKLLDLP KLLDICAIYG HENAELTKSL IENAVKSQVG VPDNLKTMLS HFLGILHTMH RRCTSSLETL FTSANSEDHG SKQLHSDLLE
0301: VMDFINDGVV SLDSLTFAYS PAALILACPV ETSYGSDELL SSLVRLHDSL LPSLHRGFQV LFKDGDHDSL SDISTSLSML STRIGSLCWK ILDTCYLSKD
0401: LSDHESSIPA VTKMFPSRVE DPMVRADILI QTFREISGLS DQSLESKNRL LHKIEKSYRI IERLRSLQKA GWISMEDEQL QYLSMIMLHS GGTVSVKESP
0501: LLLTDGRNTT ELMDENAVVM QSKISQIKDI FPEYGNGFLA ACLEAYNQNP EEVIQRILEG TLHEDLQRLD TSSETMPQPK PAPTLGSKDK GKGKLIESDS
0601: SSSGIYTEQP MTRPSVPASS ASSTAVGRFV RKPKDDTPSY KILDARKESD RERNAALLAQ YEYDDEYDDS FDDLGFSVGE SATGESESFG GNRAGQADSE
0701: PSAASKWGSR KNPQFYVKDG KNYSYKVAGS VAVANANEAS LVNEAQEDMI LGLGRGGNIP LGAVRKLTEY QTQRDDKGQS NVNVNTGDGR ENVRFGRGRG
0801: RGRGMAREQT QEKSNDNSNN SEATTEAENG GGRGRGRGRR GGGGGRNNHN HKDRAMKKHI ASVSGKNSKM ERQLVASRKV QQEENKKKKL SVDEDEYCAR
0901: KHVSDIESEK EEVDKSCLTE EEEEEDEYLS DHNSQKRTRE AVTTRYDDTS YDDEWLFGTV NQQKKSAIKD DVEDMNMKFQ IASTALFSFP RAQFLSRVGI
1001: FSLPYTVMF
0101: DGGLDPVESQ GVVDLLNREL ARLLKLNPRL FWREVASDAS LHDFLDSFLQ FRSRWYDFPF HGVKGIVAGV IVGEIELCRR VFMVLYRISS HRDPGARAAD
0201: SLSQKDHEVL LQEKKLLDLP KLLDICAIYG HENAELTKSL IENAVKSQVG VPDNLKTMLS HFLGILHTMH RRCTSSLETL FTSANSEDHG SKQLHSDLLE
0301: VMDFINDGVV SLDSLTFAYS PAALILACPV ETSYGSDELL SSLVRLHDSL LPSLHRGFQV LFKDGDHDSL SDISTSLSML STRIGSLCWK ILDTCYLSKD
0401: LSDHESSIPA VTKMFPSRVE DPMVRADILI QTFREISGLS DQSLESKNRL LHKIEKSYRI IERLRSLQKA GWISMEDEQL QYLSMIMLHS GGTVSVKESP
0501: LLLTDGRNTT ELMDENAVVM QSKISQIKDI FPEYGNGFLA ACLEAYNQNP EEVIQRILEG TLHEDLQRLD TSSETMPQPK PAPTLGSKDK GKGKLIESDS
0601: SSSGIYTEQP MTRPSVPASS ASSTAVGRFV RKPKDDTPSY KILDARKESD RERNAALLAQ YEYDDEYDDS FDDLGFSVGE SATGESESFG GNRAGQADSE
0701: PSAASKWGSR KNPQFYVKDG KNYSYKVAGS VAVANANEAS LVNEAQEDMI LGLGRGGNIP LGAVRKLTEY QTQRDDKGQS NVNVNTGDGR ENVRFGRGRG
0801: RGRGMAREQT QEKSNDNSNN SEATTEAENG GGRGRGRGRR GGGGGRNNHN HKDRAMKKHI ASVSGKNSKM ERQLVASRKV QQEENKKKKL SVDEDEYCAR
0901: KHVSDIESEK EEVDKSCLTE EEEEEDEYLS DHNSQKRTRE AVTTRYDDTS YDDEWLFGTV NQQKKSAIKD DVEDMNMKFQ IASTALFSFP RAQFLSRVGI
1001: FSLPYTVMF
001: MSNRRSNRQD ENTRYVPKGH QQQKFVPKPM NPTPTSNSTP FPVSLSSSLR QSDSSGASSR VSASGGSRVR IGDQGQLVSS KSPAQGGGSF VNYLPQDEAV
101: AAGLGPDDGG LDPVESQGVV DLLNRELTRL LKLNPRDFWR EVASDASLHD FLDSFLQFRS RWYDFPFHGV KGIVAGVIVG ELELCRRVFM VLYRISSNRD
201: PGAKAADSLS QKDHEVLLQD KKLLDLPKLL DICAIYGHEN AELTKSLIEN AVKSQNGISE SLNMMLSHFL GILHTMHHRC TSSLETLVSS ANSEDHGRRQ
301: LHSDLLEVMD FINDGVVSLD AFISAYTPAV FILACPVETS YGSDELLRSL VRLHDSLLPS LHRGFQVLFK DEDHDSLSDI STSLNMLSTR IGSLCWKILD
401: ICYLSNDKFN HETSIPAVTK MFPSRVEDPM VRADILIQTF REISGLSEQS LESKNRLLQK IEKNYRIIDR LRSLQNAGWI SMEDEQLQYL SMIMLHSADT
501: FSMKESPLLL TDGRNAEELM DENAVVMQSK ISQIKDIFPE YGNGFLAACL EAYNQNPEEV IQRILEGTLH EDLQRLDTSL ETMPQPKSAP TLRSKDKGKG
601: KLIESDTSSS ASAIYTEKPI TRPSLPASSA SSATVGRFVR KPKDDTPSYK ILDARKESDR ERNAALLAQY EYDDEYDDSF DDLGLSIAES GTEESGAFGN
701: RAGSEPSDAP KWGSRKNPQF YVKDGKNYSY KVAGAVAVAN ANEASLVNEA EGDKILGLGR GGNIPLGAVR KLTEYQAQRD EKGQSNVNVN PSDGRENGRN
801: WRGVRGRGRG VVNREQPQEK SNESSNNNSE VNTEAENGGG RGRGRGRRGG GGGRNHNHKD RAMKKHIASV SGF
101: AAGLGPDDGG LDPVESQGVV DLLNRELTRL LKLNPRDFWR EVASDASLHD FLDSFLQFRS RWYDFPFHGV KGIVAGVIVG ELELCRRVFM VLYRISSNRD
201: PGAKAADSLS QKDHEVLLQD KKLLDLPKLL DICAIYGHEN AELTKSLIEN AVKSQNGISE SLNMMLSHFL GILHTMHHRC TSSLETLVSS ANSEDHGRRQ
301: LHSDLLEVMD FINDGVVSLD AFISAYTPAV FILACPVETS YGSDELLRSL VRLHDSLLPS LHRGFQVLFK DEDHDSLSDI STSLNMLSTR IGSLCWKILD
401: ICYLSNDKFN HETSIPAVTK MFPSRVEDPM VRADILIQTF REISGLSEQS LESKNRLLQK IEKNYRIIDR LRSLQNAGWI SMEDEQLQYL SMIMLHSADT
501: FSMKESPLLL TDGRNAEELM DENAVVMQSK ISQIKDIFPE YGNGFLAACL EAYNQNPEEV IQRILEGTLH EDLQRLDTSL ETMPQPKSAP TLRSKDKGKG
601: KLIESDTSSS ASAIYTEKPI TRPSLPASSA SSATVGRFVR KPKDDTPSYK ILDARKESDR ERNAALLAQY EYDDEYDDSF DDLGLSIAES GTEESGAFGN
701: RAGSEPSDAP KWGSRKNPQF YVKDGKNYSY KVAGAVAVAN ANEASLVNEA EGDKILGLGR GGNIPLGAVR KLTEYQAQRD EKGQSNVNVN PSDGRENGRN
801: WRGVRGRGRG VVNREQPQEK SNESSNNNSE VNTEAENGGG RGRGRGRRGG GGGRNHNHKD RAMKKHIASV SGF
Arabidopsis Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:B3H6L4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.