CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028088_P003	Maize	plastid	90.68	91.61
Os03t0205000-01	Rice	plastid	67.98	72.38
TraesCS4B01G257700.1	Wheat	plastid	66.97	62.83
HORVU4Hr1G069920.9	Barley	cytosol	58.16	61.13
TraesCS4D01G257600.1	Wheat	plastid	66.26	60.95
TraesCS4A01G047100.1	Wheat	cytosol	57.14	56.63
GSMUA_Achr3P30080_001	Banana	plastid	43.87	51.67
KRH52085	Soybean	plastid	41.54	48.29
KRH61398	Soybean	plastid	40.93	47.92
VIT_18s0001g09180.t01	Wine grape	cytosol	37.39	45.9
PGSC0003DMT400055441	Potato	cytosol	33.84	45.88
AT1G27752.1	Thale cress	nucleus, plastid	40.43	45.7
Solyc04g077930.2.1	Tomato	nucleus, plastid	41.64	45.16
CDY11766	Canola	nucleus, plastid	40.43	41.56
CDX90107	Canola	nucleus, plastid	40.73	40.48
Bra010919.1-P	Field mustard	nucleus, plastid	41.13	40.24
VIT_18s0001g09190.t01	Wine grape	nucleus, plastid	5.78	39.58
CDY11511	Canola	plasma membrane	10.94	39.56
CDX84904	Canola	plastid	4.15	38.32

Protein Annotations

EnsemblPlants:EER92676	EnsemblPlantsGene:SORBI_3001G464500	EntrezGene:8081865	Gene3D:1.10.8.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	PANTHER:PTHR21494	PANTHER:PTHR21494:SF0
PFAM:PF02845	PFscan:PS51140	ProteinID:EER92676	ProteinID:EER92676.1	RefSeq:XP_002465678.1	SEG:seg
SMART:SM00546	SUPFAM:SSF46934	UniParc:UPI0001A828E0	UniProt:C5WTS2	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr1:+:73846899..73853536

Molecular Weight (calculated)

107225.0 Da

IEP (calculated)

6.802

GRAVY (calculated)

-0.601

Length

987 amino acids

Sequence
(BLAST)

001: MSSAPPEHQS KPSHHRRQHH NPGPRPQQPP PQRYVPKSAA PAAPKPSPPS QPSLTTALRS SAASSSASGS GGSSSGSVGG GAVDAFVAYL PHDEAVAAGL
101: GGLDAHESQV VVDLLNNALA ALLRAKPREF WLQVAQNSSL HEFLDSYLQF RHRWYDLPHR GPKGTVAGLV VGELELCRRV FMVLYRISSN KDPGAGRGES
201: LSMKEHAALL LEKKMLDLPK LLDICAIYEH DNGKLTSSLV TNVINVQPSV LDGINIVIPQ FLNIFHTMHD RCMTSLQVLT STRSIDNGYV QLQKDFLEVL
301: DFINDAIVTL DSFVGAYQPA ALLFCTNFEM SYGVEELLNA LARLYDSLLP SLLQGFKIMP KSQSNTEASL DSTLSDIPLG IRMLSKRTVR FGWRLLHYCY
401: LNDQVREHDA QTSTKMFPAK VEDPMIRGDI LVQTLKDINR EATYSSQVKH GNTFLQALES EFQLMSQIGD IRNKGWIYMD DEQFQFLSRL CGSTHTSWNG
501: IPDLPVSSHH GGELQQKDEE TAMVESKISQ IRDLFPDYGK GFLSACLEAY NLNPEEVIQR ILEGTLHQDL LALDTSLEEM PQKKLAPTAV KDKGKGILVE
601: TAPQITKKPH KVAETHYIVQ DGPSSATSLA SQGPSSAISS ASQGSSSAIS QASLGPSSAI SSAFQGSSAI SSASLGPSSS VSSVPKGRFT RKANDDLPDT
701: AILDSKNAKD AARSVILDSQ YEYEDEYDDS FDDLGFSVVE SSYEETDGAN DAEASSHGPR WSSQKKPQFY VKDGKNYSYK VAGSVAVSNA REAAAMRQTQ
801: KDTIYGLGRG GNVPFGVSNR QHIDVEEEEV GDADNSGRGS NSRGRGRKGG REGNRPEENE SSNGRGSGFG GRRGGWNQGN PAEENWNPNG QQGFGRGSRR
901: GGWNQGGPAK EDGNSSGRQE GFGRGARRSS MNHDHYSAED NEGHHDPAQG FTRGPAPRGG GHGRGGGRNH HRRDRAMKKH MQGLTGL

Best Arabidopsis Sequence Match ( AT1G27752.1 )
(BLAST)

001: MSNRRSNRQD ENTRYVPKGH QQQKFVPKPM NPTPTSNSTP FPVSLSSSLR QSDSSGASSR VSASGGSRVR IGDQGQLVSS KSPAQGGGSF VNYLPQDEAV
101: AAGLGPDDGG LDPVESQGVV DLLNRELTRL LKLNPRDFWR EVASDASLHD FLDSFLQFRS RWYDFPFHGV KGIVAGVIVG ELELCRRVFM VLYRISSNRD
201: PGAKAADSLS QKDHEVLLQD KKLLDLPKLL DICAIYGHEN AELTKSLIEN AVKSQNGISE SLNMMLSHFL GILHTMHHRC TSSLETLVSS ANSEDHGRRQ
301: LHSDLLEVMD FINDGVVSLD AFISAYTPAV FILACPVETS YGSDELLRSL VRLHDSLLPS LHRGFQVLFK DEDHDSLSDI STSLNMLSTR IGSLCWKILD
401: ICYLSNDKFN HETSIPAVTK MFPSRVEDPM VRADILIQTF REISGLSEQS LESKNRLLQK IEKNYRIIDR LRSLQNAGWI SMEDEQLQYL SMIMLHSADT
501: FSMKESPLLL TDGRNAEELM DENAVVMQSK ISQIKDIFPE YGNGFLAACL EAYNQNPEEV IQRILEGTLH EDLQRLDTSL ETMPQPKSAP TLRSKDKGKG
601: KLIESDTSSS ASAIYTEKPI TRPSLPASSA SSATVGRFVR KPKDDTPSYK ILDARKESDR ERNAALLAQY EYDDEYDDSF DDLGLSIAES GTEESGAFGN
701: RAGSEPSDAP KWGSRKNPQF YVKDGKNYSY KVAGAVAVAN ANEASLVNEA EGDKILGLGR GGNIPLGAVR KLTEYQAQRD EKGQSNVNVN PSDGRENGRN
801: WRGVRGRGRG VVNREQPQEK SNESSNNNSE VNTEAENGGG RGRGRGRRGG GGGRNHNHKD RAMKKHIASV SGF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:B3H6L4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.