CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52085	Soybean	plastid	87.54	86.93
VIT_18s0001g09180.t01	Wine grape	cytosol	53.62	56.22
PGSC0003DMT400055441	Potato	cytosol	47.69	55.22
Solyc04g077930.2.1	Tomato	nucleus, plastid	58.6	54.29
AT1G27752.1	Thale cress	nucleus, plastid	54.57	52.69
GSMUA_Achr3P30080_001	Banana	plastid	51.6	51.91
Bra010919.1-P	Field mustard	nucleus, plastid	54.21	45.29
Os03t0205000-01	Rice	plastid	47.45	43.15
Zm00001d028088_P003	Maize	plastid	47.45	40.94
EER92676	Sorghum	plastid	47.92	40.93
CDX84904	Canola	plastid	4.98	39.25
HORVU4Hr1G069920.9	Barley	cytosol	41.76	37.49
TraesCS4B01G257700.1	Wheat	plastid	45.67	36.6
TraesCS4D01G257600.1	Wheat	plastid	45.55	35.79
TraesCS4A01G047100.1	Wheat	cytosol	40.57	34.34

Protein Annotations

EMBL:ACUP02002162	EnsemblPlants:KRH61398	EnsemblPlantsGene:GLYMA_04G045100	EntrezGene:100778129	Gene3D:1.10.8.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	PANTHER:PTHR21494
PFAM:PF02845	PFscan:PS51140	ProteinID:KRH61398	ProteinID:KRH61398.1	ProteinID:KRH61399.1	SEG:seg
SMART:SM00546	SUPFAM:SSF46934	UniParc:UPI000233950E	UniProt:I1JTQ4	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr4:+:3600988..3608658

Molecular Weight (calculated)

93991.4 Da

IEP (calculated)

6.092

GRAVY (calculated)

-0.578

Length

843 amino acids

Sequence
(BLAST)

001: MSNRSSQGRQ HDNNNNKGFA KTHNQKKFVP KNQSQNPNPN PTPTLSTSLR QTQPNRGQKG NFVKYLPQDE AVAAGLGAED GALDPLESQR VVDLLNTQLS
101: RLLKLKPKQF WTQVATDTSL HELLDSFLQF RSRWYDFPHR GVQGIVAGVI VGELELSRRV FMVLYRISSN KDPGARPVDA LSLRDHEVLL QEKKLLELPK
201: LLDICAIYHH ENEELTRSLV RNSLNAQPWI HNNLTAVISH FLGIVSTMHE RCSSSLEVLF SSGNFDHHNA AFLQADLLEV MDFINDAIVS MDSFVSVYEP
301: AAVFFSCPVE MSYGNEELLS LLARLHDSLI PSLQKGFRVI FADKQDDTVS NVLVSLKMLK IRLVKFGWQL LHLCYLSDEV FRDSIPLPAA TKMFPANVED
401: PVIRADILVQ TFREINSISL HSQESHLKET FLQDVERNFN ILSRIERLRD GGWIFIDDEQ FQYISGMLSS VYKEPYSAST PAPNQTLLMD EDAAISESNI
501: SQIRDLFPDY GKGFLAACLE VYDQNPEEVI QRILEGTLHE DLQNMDTSLE TLPPAKSTTV GGNDKGKGKL IDSTPASSNP EVVRGKQQAE GPVMSSSASL
601: GKFVRKSRAD LPDRSILDKK DEKDTSRTAA MILQYEYEDE YDDSFDDLGL SVADSGVEEN ETLGDQINAK SGNSWATGSG NSVKNAPDSK WGSRKKPQYY
701: VKDGKNYSYK VAGAVAVANS DEASLITQAQ KELIHGLGRG GNLPLDAVKK VTDSYKEDDN QSQVSEMEGR GISGNSFGRG RKEGGKQVSS HQQQEKQSDD
801: SEVDSNNQRG RGRGRGRGRG GGRNNHYQKD RAMKKHFSGM SGY

Best Arabidopsis Sequence Match ( AT1G27752.1 )
(BLAST)

001: MSNRRSNRQD ENTRYVPKGH QQQKFVPKPM NPTPTSNSTP FPVSLSSSLR QSDSSGASSR VSASGGSRVR IGDQGQLVSS KSPAQGGGSF VNYLPQDEAV
101: AAGLGPDDGG LDPVESQGVV DLLNRELTRL LKLNPRDFWR EVASDASLHD FLDSFLQFRS RWYDFPFHGV KGIVAGVIVG ELELCRRVFM VLYRISSNRD
201: PGAKAADSLS QKDHEVLLQD KKLLDLPKLL DICAIYGHEN AELTKSLIEN AVKSQNGISE SLNMMLSHFL GILHTMHHRC TSSLETLVSS ANSEDHGRRQ
301: LHSDLLEVMD FINDGVVSLD AFISAYTPAV FILACPVETS YGSDELLRSL VRLHDSLLPS LHRGFQVLFK DEDHDSLSDI STSLNMLSTR IGSLCWKILD
401: ICYLSNDKFN HETSIPAVTK MFPSRVEDPM VRADILIQTF REISGLSEQS LESKNRLLQK IEKNYRIIDR LRSLQNAGWI SMEDEQLQYL SMIMLHSADT
501: FSMKESPLLL TDGRNAEELM DENAVVMQSK ISQIKDIFPE YGNGFLAACL EAYNQNPEEV IQRILEGTLH EDLQRLDTSL ETMPQPKSAP TLRSKDKGKG
601: KLIESDTSSS ASAIYTEKPI TRPSLPASSA SSATVGRFVR KPKDDTPSYK ILDARKESDR ERNAALLAQY EYDDEYDDSF DDLGLSIAES GTEESGAFGN
701: RAGSEPSDAP KWGSRKNPQF YVKDGKNYSY KVAGAVAVAN ANEASLVNEA EGDKILGLGR GGNIPLGAVR KLTEYQAQRD EKGQSNVNVN PSDGRENGRN
801: WRGVRGRGRG VVNREQPQEK SNESSNNNSE VNTEAENGGG RGRGRGRRGG GGGRNHNHKD RAMKKHIASV SGF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:B3H6L4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.