Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400055441 | Potato | cytosol | 76.81 | 96.02 |
| KRH61398 | Soybean | plastid | 54.29 | 58.6 |
| KRH52085 | Soybean | plastid | 53.41 | 57.24 |
| VIT_18s0001g09180.t01 | Wine grape | cytosol | 49.56 | 56.09 |
| AT1G27752.1 | Thale cress | nucleus, plastid | 51.98 | 54.18 |
| GSMUA_Achr3P30080_001 | Banana | plastid | 47.8 | 51.91 |
| Bra010919.1-P | Field mustard | nucleus, plastid | 50.88 | 45.89 |
| Os03t0205000-01 | Rice | plastid | 46.26 | 45.42 |
| Zm00001d028088_P003 | Maize | plastid | 44.84 | 41.76 |
| EER92676 | Sorghum | plastid | 45.16 | 41.64 |
| HORVU4Hr1G069920.9 | Barley | cytosol | 40.99 | 39.72 |
| TraesCS4B01G257700.1 | Wheat | plastid | 44.51 | 38.5 |
| CDX84904 | Canola | plastid | 4.51 | 38.32 |
| TraesCS4D01G257600.1 | Wheat | plastid | 44.62 | 37.84 |
| TraesCS4A01G047100.1 | Wheat | cytosol | 39.67 | 36.24 |
Protein Annotations
| EnsemblPlants:Solyc04g077930.2.1 | EnsemblPlantsGene:Solyc04g077930.2 | Gene3D:1.10.8.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:CUE | InterPro:IPR003892 | InterPro:UBA-like_sf | PANTHER:PTHR21494 | PFAM:PF02845 | PFscan:PS51140 |
| SEG:seg | SMART:SM00546 | SUPFAM:SSF46934 | UniParc:UPI0002766853 | UniProt:K4BUN0 | MapMan:35.2 |
Description
No Description!
Coordinates
chr4:-:62789089..62799351
Molecular Weight (calculated)
100801.0 Da
IEP (calculated)
5.979
GRAVY (calculated)
-0.587
Length
910 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNRYSNQNR NEKTQKKFVP KKEMQASQTL ANSFRQSVSI KSEGSTNADN SSSAGSSAGE VKSRVRMGES GAWVPAAIPS GKFVDYLPQD EAVAAGLGAD
101: EGALDPVESQ RVVDVLNREL FRLLKMNARD FWREVASDSS LHSFLESFLK FRSRWYDFPY RGARGIVAGV VVGEFELCRR IFMVLYRISS NRDPGAKTAD
201: SLTQKDHEAL LQEKKLLDLP KLLDICAIYG HENEDLTRIL VVNAIKSQPW IHDDLSSVIT HFLSIVQTMY ERCSSSLEVL FSSSHFQDHG HSRLQTDYLE
301: VMDFLNDAVV SMDAFVNAYK QASIYFCCPV EMSHGNEEVL TTLARLHNSL LPSLRRGFHI ILTSGEKSLT ESSDEMRSNV FVSLKMLSTR IVNFGWKLLY
401: LCYLSDEAFV ESSPLPATMK MFPTNVEDPA IRADILVQSV RDISGDYLQA LEGHRKGTFL QIIEQNYNIM SRIELLRNTG WISMDDDQFK FLLGITIHPV
501: EDNIGRAAHP AASGKDNRPQ VDEDAAIVES KISQIRDLFP DYGKGFLAAC LEVYNQNPEE VIQRILEGTL HEELQSLDIS LEKLPPPKSD VASMTRNDKG
601: KGKLVESTPI PPRNIVPAAS PYKAVGSSNS SIAPAGRFIR KTASEEPASL TLDSRDAKDL AKTLALSSQL EYEDEYDDSF DDLGLSIGDS AFEETENLQD
701: KTNFSRGRSS EADNGSSASN ASKWGSRKMP QFYVKDGKNY SYKVEGAVAV ANYNEASLVN QAQKEMIHGL GRGGNLPLGA VKRLTEPNEE KDDEPESNEM
801: GGRGRGRGFY RGGRGGRRRD SNEEKDIEPG SNEMGGRGGG RGFFRGGRGG RRGGESNEEK DNEPESDEMD GSGGGRGFRG GRGGRRGGGR SNHYRKDQAM
901: KKHFSGLTGH
101: EGALDPVESQ RVVDVLNREL FRLLKMNARD FWREVASDSS LHSFLESFLK FRSRWYDFPY RGARGIVAGV VVGEFELCRR IFMVLYRISS NRDPGAKTAD
201: SLTQKDHEAL LQEKKLLDLP KLLDICAIYG HENEDLTRIL VVNAIKSQPW IHDDLSSVIT HFLSIVQTMY ERCSSSLEVL FSSSHFQDHG HSRLQTDYLE
301: VMDFLNDAVV SMDAFVNAYK QASIYFCCPV EMSHGNEEVL TTLARLHNSL LPSLRRGFHI ILTSGEKSLT ESSDEMRSNV FVSLKMLSTR IVNFGWKLLY
401: LCYLSDEAFV ESSPLPATMK MFPTNVEDPA IRADILVQSV RDISGDYLQA LEGHRKGTFL QIIEQNYNIM SRIELLRNTG WISMDDDQFK FLLGITIHPV
501: EDNIGRAAHP AASGKDNRPQ VDEDAAIVES KISQIRDLFP DYGKGFLAAC LEVYNQNPEE VIQRILEGTL HEELQSLDIS LEKLPPPKSD VASMTRNDKG
601: KGKLVESTPI PPRNIVPAAS PYKAVGSSNS SIAPAGRFIR KTASEEPASL TLDSRDAKDL AKTLALSSQL EYEDEYDDSF DDLGLSIGDS AFEETENLQD
701: KTNFSRGRSS EADNGSSASN ASKWGSRKMP QFYVKDGKNY SYKVEGAVAV ANYNEASLVN QAQKEMIHGL GRGGNLPLGA VKRLTEPNEE KDDEPESNEM
801: GGRGRGRGFY RGGRGGRRRD SNEEKDIEPG SNEMGGRGGG RGFFRGGRGG RRGGESNEEK DNEPESDEMD GSGGGRGFRG GRGGRRGGGR SNHYRKDQAM
901: KKHFSGLTGH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.