Factsheet for Bra035890.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16770	Canola	cytosol, mitochondrion	91.77	91.94
AT5G62560.1	Thale cress	cytosol	80.32	80.32
Bra029250.1-P	Field mustard	cytosol	78.0	78.99
Bra018108.1-P	Field mustard	cytosol	44.36	76.07
Bra031875.1-P	Field mustard	mitochondrion	50.45	51.65
KRH63473	Soybean	cytosol, plastid	47.94	51.05
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	47.41	50.67
KRH54443	Soybean	cytosol, mitochondrion	45.98	49.61
Solyc03g113870.1.1	Tomato	cytosol	40.61	42.99
PGSC0003DMT400062863	Potato	cytosol	40.07	41.87
Bra025605.1-P	Field mustard	cytosol, plastid	41.14	40.93
GSMUA_Achr9P14450_001	Banana	plastid	31.48	37.85
GSMUA_Achr10P...	Banana	cytosol	30.41	37.2
Zm00001d044773_P001	Maize	cytosol	30.59	37.09
GSMUA_Achr5P05220_001	Banana	mitochondrion	31.84	36.7
Os06t0238000-00	Rice	plasma membrane	33.27	35.91
TraesCS7D01G196500.1	Wheat	mitochondrion	33.09	35.85
TraesCS7B01G100600.1	Wheat	mitochondrion	33.27	35.77
GSMUA_Achr7P19940_001	Banana	plastid	33.81	35.73
TraesCS7A01G194900.1	Wheat	mitochondrion	32.92	35.66
GSMUA_Achr3P06000_001	Banana	plastid	32.74	35.26
HORVU7Hr1G039760.2	Barley	mitochondrion	32.74	34.92
HORVU6Hr1G043090.2	Barley	cytosol	22.18	34.07
KXG19688	Sorghum	plastid	32.38	33.64
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	32.56	32.79
TraesCS5A01G201400.1	Wheat	mitochondrion	32.56	32.79
Os06t0238200-00	Rice	plasma membrane	28.8	32.79
HORVU4Hr1G008170.1	Barley	cytosol	10.73	32.61
TraesCS5B01G200100.1	Wheat	mitochondrion	32.74	32.56
Zm00001d005699_P001	Maize	mitochondrion	30.95	32.46
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	10.02	32.37
TraesCS5D01G207500.1	Wheat	mitochondrion	32.2	32.03
TraesCS7D01G229000.1	Wheat	mitochondrion	30.23	31.41
Zm00001d020358_P001	Maize	mitochondrion	31.48	31.37
Os09t0386200-01	Rice	plasma membrane	30.59	31.26
TraesCS7B01G194100.1	Wheat	mitochondrion	30.23	31.24
TraesCS7A01G225500.1	Wheat	mitochondrion	30.05	31.11
HORVU7Hr1G046920.1	Barley	mitochondrion	29.87	30.93
Os08t0421850-00	Rice	mitochondrion	32.02	30.6
OQU89450	Sorghum	mitochondrion	32.02	30.49
HORVU4Hr1G082630.1	Barley	plastid	7.33	29.29
OQU80448	Sorghum	mitochondrion	29.7	28.97
Zm00001d032264_P001	Maize	mitochondrion	29.52	28.8
GSMUA_Achr9P28140_001	Banana	cytosol	23.97	28.39
EER92069	Sorghum	cytosol	26.65	25.91
HORVU6Hr1G091220.1	Barley	plastid	8.94	25.91
HORVU6Hr1G008010.2	Barley	plastid	8.23	24.47

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra035890	EnsemblPlants:Bra035890.1	EnsemblPlants:Bra035890.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M4F490	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000254209C
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT5G62560 (E=3e-249) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein

Coordinates

chrA09:+:3062473..3064258

Molecular Weight (calculated)

60309.7 Da

IEP (calculated)

6.605

GRAVY (calculated)

-0.225

Length

559 amino acids

Sequence
(BLAST)

001: MGGTKKKWFS FHQRSASATT TTVPQHKHNE TPPEFLCPIT GFLMSDPVVV PSGQTFERLS VQVCRNVGYV PDLLDGTRPD LSTAIPNLAM KSTIFSWCDR
101: NKVDHPRPPD SAYVENVVRA RMNIDPQSRI GTQPSLGDPE PEILPPVAEN SPSDYYAVME AIRARSKNSV SPSPSPTTSL ESVTVGQSPY HPTRAVSMFS
201: SSSTTSSGVY IGAESPNAIS FSSSDYSSSS PMSPEEEEIF NKLRTADIFD HEQGLILLRK MTRTSEELRV SLCTDRILSF LRSLLVSRYN LVQTNAAASL
301: VNLSLEKQNK VKIVRSGFVP LLIDVLKSGT TEAQEHVAGV LFSLALEDEN KMVIGVLGAV EPLLHALRSS DSERARQDAS LALYHLSLVP SNRTRLVRAG
401: AVATLLSMVR SGESTSRILL VLCNLAACPD GKGAMLEGNA VAILVGKLRE GGGEDSEAAR ENCVAVLLTL CQGNLRFRGL ASEVGAEEVL KEVEERGNGR
501: VKENAAKILQ VMRGGGGGGS TFGENGEARE WNRMLEGTGL SRTQFQGGQN GGFACSSQF

Best Arabidopsis Sequence Match ( AT5G62560.1 )
(BLAST)

001: MGGNKQRWFS FHQRSSSATT TTLPQHKHDE TPPEFLCPIT GFLMSDPVVV SSGQTFERLS VQVCRNLGYI PDLLDGTRPD LSTVIPNLAM KSTIFSWCDR
101: QKVDHPRPPD AAYVEGVVRA RMDKDPNPSP GQSPGPGDKD PEPEILPPVE ENSPSDYDAV MEAIRARSKN SMSPTTSLES VTIGQSSYHP VRAVSMFSSS
201: TTSSSSGVFA GADSPFRNAM SFSSTDHSSS PMSPEEEEIF NKLRGTDIFD HEQGLILLRK MTRSSEDLRV SLCTDRILSF LRSLLVSRYN LVQTNAAASV
301: VNLSLEKQNK VKIVRSGFVP LLIDVLKSGT TEAQEHVAGA LFSLALEDEN KMVIGVLGAV EPLLHALRSS ESERARQDAA LALYHLSLIP SNRTRLVRAG
401: AVPTLLSMVR SGDSTSRILL VLCNLAACPD GKGAMLDGNA VAILVGKLRE VGGGDSEAAR ENCVAVLLTL CQGNLRFRGL ASEAGAEEVL MEVEENGNER
501: VKEKASKILL AMRGGGGGES EFGENAEARE WNRMLEATGL SRTQFQGGQN GGFAYSSQF

Arabidopsis Description

PUB41U-box domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q0WUF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.