CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035890.1-P	Field mustard	mitochondrion, plastid	91.94	91.77
CDX87251	Canola	mitochondrion	89.61	88.81
CDY30728	Canola	cytosol	75.27	82.35
CDY69575	Canola	cytosol	70.79	80.94
AT5G62560.1	Thale cress	cytosol	77.96	77.82
CDY24151	Canola	cytosol	61.29	72.3
CDY36926	Canola	cytosol	62.01	67.32
CDY37807	Canola	mitochondrion	51.25	52.19
CDY33979	Canola	mitochondrion	50.9	51.36
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	48.03	51.24
KRH63473	Soybean	cytosol, plastid	48.21	51.24
KRH54443	Soybean	cytosol, mitochondrion	46.42	50.0
Solyc03g113870.1.1	Tomato	cytosol	41.22	43.56
PGSC0003DMT400062863	Potato	cytosol	40.86	42.62
CDY44594	Canola	cytosol, plastid	41.4	42.08
CDY53109	Canola	cytosol, plastid	41.04	41.34
GSMUA_Achr9P14450_001	Banana	plastid	31.72	38.06
GSMUA_Achr10P...	Banana	cytosol	30.29	36.98
Zm00001d044773_P001	Maize	cytosol	30.47	36.88
GSMUA_Achr5P05220_001	Banana	mitochondrion	31.54	36.29
GSMUA_Achr7P19940_001	Banana	plastid	33.69	35.54
Os06t0238000-00	Rice	plasma membrane	32.97	35.52
GSMUA_Achr3P06000_001	Banana	plastid	32.8	35.26
TraesCS7D01G196500.1	Wheat	mitochondrion	32.44	35.08
TraesCS7A01G194900.1	Wheat	mitochondrion	32.26	34.88
TraesCS7B01G100600.1	Wheat	mitochondrion	32.44	34.81
HORVU7Hr1G039760.2	Barley	mitochondrion	32.26	34.35
HORVU6Hr1G043090.2	Barley	cytosol	22.22	34.07
KXG19688	Sorghum	plastid	32.26	33.46
Os06t0238200-00	Rice	plasma membrane	29.03	32.99
Zm00001d005699_P001	Maize	mitochondrion	31.36	32.83
HORVU4Hr1G008170.1	Barley	cytosol	10.75	32.61
TraesCS5A01G201400.1	Wheat	mitochondrion	32.26	32.43
TraesCS5D01G207500.1	Wheat	mitochondrion	32.62	32.38
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	10.04	32.37
Zm00001d020358_P001	Maize	mitochondrion	32.44	32.26
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	31.9	32.07
TraesCS5B01G200100.1	Wheat	mitochondrion	32.26	32.03
TraesCS7D01G229000.1	Wheat	mitochondrion	30.11	31.23
TraesCS7B01G194100.1	Wheat	mitochondrion	30.11	31.05
TraesCS7A01G225500.1	Wheat	mitochondrion	29.93	30.93
HORVU7Hr1G046920.1	Barley	mitochondrion	29.75	30.74
Os09t0386200-01	Rice	plasma membrane	30.11	30.71
OQU89450	Sorghum	mitochondrion	31.9	30.32
Os08t0421850-00	Rice	mitochondrion	31.54	30.09
OQU80448	Sorghum	mitochondrion	30.11	29.32
Zm00001d032264_P001	Maize	mitochondrion	30.11	29.32
HORVU4Hr1G082630.1	Barley	plastid	7.35	29.29
GSMUA_Achr9P28140_001	Banana	cytosol	24.01	28.39
EER92069	Sorghum	cytosol	26.88	26.09
HORVU6Hr1G091220.1	Barley	plastid	8.96	25.91
HORVU6Hr1G008010.2	Barley	plastid	8.24	24.47

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078FQM0	UniProt:A0A078FQM0	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY16770	ProteinID:CDY16770	ProteinID:CDY16770.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00094646001
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EF305F	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaA09g06120DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078FQM0]

Coordinates

chrLK032067:-:269645..271428

Molecular Weight (calculated)

60333.7 Da

IEP (calculated)

6.605

GRAVY (calculated)

-0.229

Length

558 amino acids

Sequence
(BLAST)

001: MGGTKKKWFS FHQRSASATT TTVPQHKHDE TPPEFLCPIT GFLMSDPVVV PSGQTFERLS VQVCRNVGYV PDLLDGTRPD FSTVIPNLAM KSTIFSWCDR
101: NKVDHPRPPD SAYVENVVRA RMNKDPQSRI GTQPSSALGD PEPEMLPPVA ENSPSDYDAV MEAIRARSKN SVSSPTTSLE SVTVGQSPYH PTRAVSMFSS
201: FSTTSSRVYI GAESPNAISF SSSDYSSSSP MSPEEEEIFN KLRTADIFDH EQGLILLRKM TRTSEELRVS LCTDRILSFL RSLLVSRYNL VQTNAAASLV
301: NLSLEKQNKV KIVRSGFVPL LIDVLKSGTT EAQEHVAGVL FSLALEDENK MVIGVLGAVE PLLHALRSSD SERARQDAAL ALYHLSLVPS NRTRLVRAGA
401: VATLLSMVRS GESTSRILLV LCNLAACPDG KGAMLEGNAV AILVGKLREG GGDDSEAARE NCVAVLLTLC QGNLRFRGLA SEVGAEEVLK EVEERGNGRV
501: KENAAKILQV MRGGGGGGSA FGENGEAREW NRMLEGTGLS RTQFQGGQNG GFACSSQF

Best Arabidopsis Sequence Match ( AT5G62560.1 )
(BLAST)

001: MGGNKQRWFS FHQRSSSATT TTLPQHKHDE TPPEFLCPIT GFLMSDPVVV SSGQTFERLS VQVCRNLGYI PDLLDGTRPD LSTVIPNLAM KSTIFSWCDR
101: QKVDHPRPPD AAYVEGVVRA RMDKDPNPSP GQSPGPGDKD PEPEILPPVE ENSPSDYDAV MEAIRARSKN SMSPTTSLES VTIGQSSYHP VRAVSMFSSS
201: TTSSSSGVFA GADSPFRNAM SFSSTDHSSS PMSPEEEEIF NKLRGTDIFD HEQGLILLRK MTRSSEDLRV SLCTDRILSF LRSLLVSRYN LVQTNAAASV
301: VNLSLEKQNK VKIVRSGFVP LLIDVLKSGT TEAQEHVAGA LFSLALEDEN KMVIGVLGAV EPLLHALRSS ESERARQDAA LALYHLSLIP SNRTRLVRAG
401: AVPTLLSMVR SGDSTSRILL VLCNLAACPD GKGAMLDGNA VAILVGKLRE VGGGDSEAAR ENCVAVLLTL CQGNLRFRGL ASEAGAEEVL MEVEENGNER
501: VKEKASKILL AMRGGGGGES EFGENAEARE WNRMLEATGL SRTQFQGGQN GGFAYSSQF

Arabidopsis Description

PUB41U-box domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q0WUF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.