CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032264_P001	Maize	mitochondrion	80.28	80.28
TraesCS7A01G225500.1	Wheat	mitochondrion	56.89	60.37
TraesCS7D01G229000.1	Wheat	mitochondrion	55.5	59.11
TraesCS7B01G194100.1	Wheat	mitochondrion	55.67	58.96
HORVU7Hr1G046920.1	Barley	mitochondrion	55.5	58.89
Os08t0421850-00	Rice	mitochondrion	53.4	52.31
OQU89450	Sorghum	mitochondrion	47.29	46.17
EER92069	Sorghum	cytosol	40.49	40.35
GSMUA_Achr10P...	Banana	cytosol	31.76	39.82
KXG19688	Sorghum	plastid	37.17	39.59
GSMUA_Achr5P05220_001	Banana	mitochondrion	33.51	39.59
GSMUA_Achr7P19940_001	Banana	plastid	36.47	39.51
GSMUA_Achr3P06000_001	Banana	plastid	35.78	39.5
Bra018108.1-P	Field mustard	cytosol	21.47	37.73
GSMUA_Achr9P14450_001	Banana	plastid	30.54	37.63
CDY24151	Canola	cytosol	29.32	35.52
CDY69575	Canola	cytosol	29.84	35.04
CDY30728	Canola	cytosol	30.19	33.92
Solyc02g087200.1.1	Tomato	mitochondrion	27.92	33.26
PGSC0003DMT400001437	Potato	mitochondrion	27.92	32.92
KRH63473	Soybean	cytosol, plastid	29.49	32.19
CDY36926	Canola	cytosol	28.62	31.91
KRH54443	Soybean	cytosol, mitochondrion	28.62	31.66
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	28.8	31.55
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	29.67	31.25
Bra029250.1-P	Field mustard	cytosol	30.02	31.16
AT3G47820.1	Thale cress	cytosol	28.8	31.07
CDY44594	Canola	cytosol, plastid	29.32	30.6
AT5G62560.1	Thale cress	cytosol	29.67	30.41
CDY16770	Canola	cytosol, mitochondrion	29.32	30.11
Bra025605.1-P	Field mustard	cytosol, plastid	29.32	29.89
AT5G40140.1	Thale cress	plastid	28.62	29.82
CDY53109	Canola	cytosol, plastid	28.8	29.78
Bra035890.1-P	Field mustard	mitochondrion, plastid	28.97	29.7
CDX87251	Canola	mitochondrion	29.14	29.66
PGSC0003DMT400062863	Potato	cytosol	27.57	29.53
Solyc03g113870.1.1	Tomato	cytosol	27.05	29.36
Bra031875.1-P	Field mustard	mitochondrion	27.23	28.57
CDY37807	Canola	mitochondrion	27.23	28.47
AT5G65200.1	Thale cress	cytosol, mitochondrion	27.4	28.24
CDY33979	Canola	mitochondrion	27.23	28.21
KRG93403	Soybean	cytosol	26.0	26.23
KRH18582	Soybean	cytosol	26.53	25.04

Protein Annotations

Gene3D:1.25.10.10	Gene3D:1.25.10.110	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A1Z5R9M1	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
EnsemblPlants:OQU80448	ProteinID:OQU80448	ProteinID:OQU80448.1	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF221	SMART:SM00185	SMART:SM00504	EnsemblPlantsGene:SORBI_3007G130100
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000B425878	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:54683055..54685169

Molecular Weight (calculated)

59199.3 Da

IEP (calculated)

7.728

GRAVY (calculated)

-0.120

Length

573 amino acids

Sequence
(BLAST)

001: MGAERARRWR FLPFRSLSLP PPAASKPKNR PPPDVTVPPP PATKEKGEEE EGEVPADFLC CPILRTPMAD PVILPSGRTY ERACVLACAE LGLSLGPDGV
101: VAGDRGRDTQ GGGVAAAIPN DALRAAVRTW CARSGRAAPV SPSGEEARVA VLRAVAAGTQ PPARSSSSNL SCSSEGAPVP ARSASNLSCS SEGAYAASTS
201: SSSSGRSSRE MAPVEVQVAV RGKEAAKEEQ DEPVRVADAE EEAVAKAVEG GDETEVEAAM AALRRATREG AARRRALCGP RLLAALRRVL LSSRHTASAR
301: ADAAAALANL SLEPENRVPV VRAGAVPALV EVLASAASPA EAREHAAGAL FGLALHEGNR AAIGVLGALP PLLAALADRD HAAPRARRDA GMALYHLSFA
401: AVNQCKLARA PGASRTLLSV ACDAAEQAPI RRLALMVLCN VAACAEGSAA LMDAGAVATA SAILSEGGAC NAELQECCVE ALYAMSRGSP RFRGLARAAG
501: ADRPLMLIAE QASPGVDKEV VETVLRTMGR DSSDDDHMSG RSSLPHRRRV ASWSATPAAT PPSSHQWRSV CID

Best Arabidopsis Sequence Match ( AT3G47820.1 )
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Arabidopsis Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.