CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020358_P001	Maize	mitochondrion	72.91	76.29
Zm00001d005699_P001	Maize	mitochondrion	68.99	75.98
TraesCS5A01G201400.1	Wheat	mitochondrion	65.25	69.01
Os09t0386200-01	Rice	plasma membrane	64.05	68.74
TraesCS5B01G200100.1	Wheat	mitochondrion	65.25	68.15
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	64.22	67.93
HORVU6Hr1G043090.2	Barley	cytosol	41.4	66.76
TraesCS5D01G207500.1	Wheat	mitochondrion	63.2	66.01
HORVU6Hr1G091220.1	Barley	plastid	21.64	65.8
EER92069	Sorghum	cytosol	60.65	61.91
HORVU4Hr1G008170.1	Barley	cytosol	18.91	60.33
HORVU4Hr1G082630.1	Barley	plastid	14.14	59.29
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	16.52	56.07
GSMUA_Achr7P19940_001	Banana	plastid	43.78	48.58
GSMUA_Achr5P05220_001	Banana	mitochondrion	40.03	48.45
GSMUA_Achr10P...	Banana	cytosol	37.48	48.14
HORVU6Hr1G008010.2	Barley	plastid	15.16	47.34
OQU80448	Sorghum	mitochondrion	46.17	47.29
GSMUA_Achr3P06000_001	Banana	plastid	41.4	46.82
GSMUA_Achr9P14450_001	Banana	plastid	36.12	45.59
KXG19688	Sorghum	plastid	40.37	44.05
Bra018108.1-P	Field mustard	cytosol	21.29	38.34
CDY24151	Canola	cytosol	29.98	37.21
CDY69575	Canola	cytosol	30.49	36.68
CDY30728	Canola	cytosol	31.86	36.67
Solyc02g087200.1.1	Tomato	mitochondrion	29.81	36.38
KRH63473	Soybean	cytosol, plastid	32.37	36.19
PGSC0003DMT400001437	Potato	mitochondrion	29.81	36.01
KRH54443	Soybean	cytosol, mitochondrion	31.69	35.91
CDY36926	Canola	cytosol	29.98	34.24
Bra029250.1-P	Field mustard	cytosol	32.2	34.24
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	31.69	34.19
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	30.32	34.03
AT5G65200.1	Thale cress	cytosol, mitochondrion	31.35	33.09
Solyc03g113870.1.1	Tomato	cytosol	29.64	32.95
AT5G62560.1	Thale cress	cytosol	31.18	32.74
AT3G47820.1	Thale cress	cytosol	29.47	32.58
PGSC0003DMT400062863	Potato	cytosol	29.64	32.52
CDX87251	Canola	mitochondrion	31.01	32.33
CDY44594	Canola	cytosol, plastid	29.98	32.06
Bra035890.1-P	Field mustard	mitochondrion, plastid	30.49	32.02
CDY16770	Canola	cytosol, mitochondrion	30.32	31.9
CDY53109	Canola	cytosol, plastid	29.81	31.59
Bra031875.1-P	Field mustard	mitochondrion	29.3	31.5
Bra025605.1-P	Field mustard	cytosol, plastid	30.15	31.49
AT5G40140.1	Thale cress	plastid	29.47	31.45
CDY37807	Canola	mitochondrion	29.3	31.39
CDY33979	Canola	mitochondrion	29.3	31.1
KRG93403	Soybean	cytosol	28.79	29.75
KRH18582	Soybean	cytosol	28.96	28.01

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A1W0W4Y7	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:OQU89450
ProteinID:OQU89450	ProteinID:OQU89450.1	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF79	SMART:SM00185	SMART:SM00504	EnsemblPlantsGene:SORBI_3002G192101	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0009DC87EE	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:57860760..57862523

Molecular Weight (calculated)

60280.6 Da

IEP (calculated)

6.765

GRAVY (calculated)

-0.075

Length

587 amino acids

Sequence
(BLAST)

001: MGAARPRRWK LPFHRTISAA AGGGGGSSSA PCSPSSRSSA SAAPPPPPPG HASPARSEAW AAAEAVPEEF LCPLSGALMA DPVILPSGKT FERACLQACA
101: DLAFLPPGVE DGGADTLIPN AALKAAIGTW CARSGRAVPA PPSAEAARQA VLRVMPPAVA AAAKSVRTTT ARRVAVLAAS TSNSSYSSPT ESTSSYGSAS
201: EITAAEEDDA KEEAPRRRIV KEVEADPPVA TPVDPLEDDV VGKVMDADDD GVVAAAMGAL REATREGAER RRALCTPRLL GALRRVLLLP RHAPARVDAA
301: AALVNLSLEP ANKVRIVRAG AVPALVEVLR SGASAPEARE HAAGALFGLA LNEDNRAAIG VLGAVPPLLD LLTSPAQYPP RARRDAGMAL YHLTLAAVNQ
401: SKVARFPGAP KALLAVASGA AEPGPIRRLA LMVACNVAAC AEGRNALMDA GAVASVSAIL LASPSHEDGG TADLEEWCVS AMYAMSRGSL RFRGLARAAG
501: ADRALRRVVA EEGGGVRREM ARKTLRAMRG DLDDEDGGGE YNDLTGSSAE CGDGEDCGGS IVSDGLMSFR RRQRELGVSS CGNTAEF

Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Arabidopsis Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.