CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44594	Canola	cytosol, plastid	92.78	93.62
AT5G40140.1	Thale cress	plastid	83.39	84.0
Solyc02g087200.1.1	Tomato	mitochondrion	49.82	57.38
PGSC0003DMT400001437	Potato	mitochondrion	50.0	57.0
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	52.71	53.68
CDY24151	Canola	cytosol	42.06	49.26
KRG93403	Soybean	cytosol	49.64	48.42
CDY69575	Canola	cytosol	41.52	47.13
CDY37807	Canola	mitochondrion	43.5	43.98
CDY30728	Canola	cytosol	40.43	43.92
KRH18582	Soybean	cytosol	48.01	43.82
CDY36926	Canola	cytosol	40.07	43.19
CDY33979	Canola	mitochondrion	42.96	43.04
CDY16770	Canola	cytosol, mitochondrion	41.34	41.04
CDX87251	Canola	mitochondrion	41.16	40.5
GSMUA_Achr9P14450_001	Banana	plastid	32.13	38.28
GSMUA_Achr3P06000_001	Banana	plastid	35.56	37.96
Os06t0238000-00	Rice	plasma membrane	35.02	37.45
GSMUA_Achr5P05220_001	Banana	mitochondrion	32.67	37.32
TraesCS7A01G194900.1	Wheat	mitochondrion	34.3	36.82
TraesCS7B01G100600.1	Wheat	mitochondrion	33.94	36.15
TraesCS7D01G196500.1	Wheat	mitochondrion	33.57	36.05
GSMUA_Achr10P...	Banana	cytosol	29.6	35.89
Zm00001d044773_P001	Maize	cytosol	29.42	35.36
HORVU7Hr1G039760.2	Barley	mitochondrion	33.39	35.31
GSMUA_Achr7P19940_001	Banana	plastid	33.57	35.16
HORVU4Hr1G082630.1	Barley	plastid	8.84	35.0
HORVU6Hr1G043090.2	Barley	cytosol	22.38	34.07
KXG19688	Sorghum	plastid	32.85	33.83
Os06t0238200-00	Rice	plasma membrane	29.96	33.81
HORVU4Hr1G008170.1	Barley	cytosol	11.19	33.7
Zm00001d020358_P001	Maize	mitochondrion	32.49	32.09
Zm00001d005699_P001	Maize	mitochondrion	30.87	32.08
TraesCS5A01G201400.1	Wheat	mitochondrion	32.13	32.07
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	31.77	31.71
TraesCS5B01G200100.1	Wheat	mitochondrion	31.77	31.32
TraesCS5D01G207500.1	Wheat	mitochondrion	31.77	31.32
TraesCS7D01G229000.1	Wheat	mitochondrion	30.14	31.04
Os09t0386200-01	Rice	plasma membrane	30.51	30.9
TraesCS7A01G225500.1	Wheat	mitochondrion	29.42	30.19
GSMUA_Achr9P28140_001	Banana	cytosol	25.63	30.08
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	9.39	30.06
TraesCS7B01G194100.1	Wheat	mitochondrion	29.24	29.94
HORVU7Hr1G046920.1	Barley	mitochondrion	29.06	29.81
OQU89450	Sorghum	mitochondrion	31.59	29.81
Zm00001d032264_P001	Maize	mitochondrion	29.96	28.97
OQU80448	Sorghum	mitochondrion	29.78	28.8
Os08t0421850-00	Rice	mitochondrion	29.24	27.69
HORVU6Hr1G091220.1	Barley	plastid	9.57	27.46
HORVU6Hr1G008010.2	Barley	plastid	8.66	25.53
EER92069	Sorghum	cytosol	25.99	25.04

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078IUK7	UniProt:A0A078IUK7	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY53109	ProteinID:CDY53109	ProteinID:CDY53109.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00008608001
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF157	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EC23D3	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaCnng24370DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078IUK7]

Coordinates

chrLK033165:+:12300..13964

Molecular Weight (calculated)

60509.9 Da

IEP (calculated)

8.827

GRAVY (calculated)

-0.204

Length

554 amino acids

Sequence
(BLAST)

001: MEIQRPVIKL MVLHSNHDKS DNLSRREFLP GKSKWRISLS RSPSSSSSSK SNNTSPSKTE IPTEFLCPIS GYLMADPVIV SSGHSYERAC VIASKTLGFT
101: PSPLLPNSPP DFSTVIPNLA LKSAILSWCD RRSFPPPKPL DNAAAEKLVF SLMEKTHHRP TSRKVSISEK ELIQAIKDKP SVRLDHAATE LDRRPNYFNS
201: SSDESVASSS RTLQLATRPS CFSSPSSAEI ESLEPNPSPE EEALLVKLKS NRISEIEEAL ISIRRVTRLD EGSRISLCTA RLISSLRSLI VSRYATVQVN
301: ATAVLVNLSL VKSNKVKIVR SGIVPPLIDV LKCGSSEAQE HSVGAVFSLA LEDENKTAIG VLGALEPLLH LIRVGTELTR HDSALALYHL SLVQSNRGKL
401: VKLGAVQVLL SMARLGQTMN RVLLILCNMA SCPVSRPALL DSGAVECMVG ILRGPREVTE STRESCVAVL YGLSHDGGLR FKGLAMAANA VEELTKVERS
501: GRERAKQKAK RVLEVMRAKM EDDSSPENEE IDWEELLNSG SVTRSQHRLG GDGE

Best Arabidopsis Sequence Match ( AT5G40140.1 )
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Arabidopsis Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.