Factsheet for TraesCS7B01G194100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G229000.1	Wheat	mitochondrion	91.68	92.19
HORVU7Hr1G046920.1	Barley	mitochondrion	90.2	90.37
TraesCS7A01G225500.1	Wheat	mitochondrion	87.62	87.78
Os08t0421850-00	Rice	mitochondrion	63.4	58.63
OQU80448	Sorghum	mitochondrion	58.96	55.67
Zm00001d032264_P001	Maize	mitochondrion	56.93	53.75
TraesCS5B01G200100.1	Wheat	mitochondrion	52.87	50.89
GSMUA_Achr7P19940_001	Banana	plastid	42.7	43.67
GSMUA_Achr10P...	Banana	cytosol	35.67	42.23
GSMUA_Achr5P05220_001	Banana	mitochondrion	37.71	42.06
GSMUA_Achr3P06000_001	Banana	plastid	40.11	41.81
TraesCS7B01G100600.1	Wheat	mitochondrion	39.19	40.77
GSMUA_Achr9P14450_001	Banana	plastid	34.38	40.0
Bra018108.1-P	Field mustard	cytosol	22.37	37.12
CDY24151	Canola	cytosol	30.87	35.31
CDY69575	Canola	cytosol	31.79	35.25
Solyc02g087200.1.1	Tomato	mitochondrion	30.68	34.51
PGSC0003DMT400001437	Potato	mitochondrion	30.87	34.36
CDY30728	Canola	cytosol	31.79	33.73
KRH63473	Soybean	cytosol, plastid	32.72	33.71
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	32.16	33.27
KRH54443	Soybean	cytosol, mitochondrion	31.79	33.2
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	32.53	32.35
CDY36926	Canola	cytosol	30.5	32.1
Bra029250.1-P	Field mustard	cytosol	31.98	31.34
AT3G47820.1	Thale cress	cytosol	30.68	31.26
AT5G62560.1	Thale cress	cytosol	31.79	30.77
PGSC0003DMT400062863	Potato	cytosol	30.13	30.47
Bra035890.1-P	Field mustard	mitochondrion, plastid	31.24	30.23
CDY16770	Canola	cytosol, mitochondrion	31.05	30.11
Bra031875.1-P	Field mustard	mitochondrion	30.31	30.04
AT5G65200.1	Thale cress	cytosol, mitochondrion	30.87	30.04
CDY37807	Canola	mitochondrion	30.31	29.93
Solyc03g113870.1.1	Tomato	cytosol	29.21	29.92
CDY44594	Canola	cytosol, plastid	30.31	29.87
CDX87251	Canola	mitochondrion	31.05	29.84
CDY33979	Canola	mitochondrion	30.5	29.84
CDY53109	Canola	cytosol, plastid	29.94	29.24
Bra025605.1-P	Field mustard	cytosol, plastid	30.13	29.0
AT5G40140.1	Thale cress	plastid	29.39	28.91
KRG93403	Soybean	cytosol	27.54	26.23
KRH18582	Soybean	cytosol	28.1	25.04

Protein Annotations

Gene3D:1.25.10.110	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-type_fold	InterPro:Armadillo	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR013083	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF221	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS7B01G194100
EnsemblPlants:TraesCS7B01G194100.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16453	SEG:seg	:

Description

No Description!

Coordinates

chr7B:+:333751295..333753164

Molecular Weight (calculated)

56171.1 Da

IEP (calculated)

8.315

GRAVY (calculated)

-0.083

Length

541 amino acids

Sequence
(BLAST)

001: MGAARAWRWK LLPFHSRPPP PPTTPSLPAT LSPVDKEEDV PREFLCPILG APMSDPVILP SGRTYERACI QACAELSVSP PGVEGDSPAS GGVVPIPNDA
101: LGAAIRTWSA RSGRAPPEAP SADAAREAVL RAVPTPRPPG RSSSNLSCSS RASAASTSSS SSRSSSEITA VEQLDMACAK ETKSLRVGEG EEEVGQLSVK
201: AVGGGDEWEV ESAMAALRRA TRESAPRRRA LCVPQLLAAL RRVLLSARHS AAARADATAA LANLSLEPEN RVPIVRAGAV PALVEVASLG AAAPEACEHA
301: AGALFGLALH EGNRAAIGVL GALPPLLALL TAGDQAPRAR RDAGMALLHL SLAAVNQSKL ARAPGAAKNL LSISSDSNEP LPIRRLALMV ICNVAACAEG
401: RTALMDAGAV ATFSVILSND AHRSELQECC VAALYDMSKG SPRFRGLARA AGADRPLILI AEQADPGVHK DMARKALRAM LGLGDINGGG LHDFSNSERN
501: DDDSGTMASS LPVRRRRAAS WGAPPASKLS SSHHWRSVCI D

Best Arabidopsis Sequence Match ( AT3G47820.1 )
(BLAST)

001: MGDTGRHKWF SFHHHRSASA TTMPQHNSPG ETPTEFLCPI TGFLMSDPVV VASGQTFERI SVQVCRNLSF APKLHDGTQP DLSTVIPNLA MKSTILSWCD
101: RNKMEHPRPP DYAYVEGVVR TRMDSLPPGS GHRIAKSEIL PPVAENSNSN SDYDSVMGAI RSRSRTSLSS TTSLPLHQTR PINHSTRIQS SFSTSDYSSF
201: PPMSPEEEEI YNKLTSVDTI DHEQGLIQLR KTTRSNETTR ISLCTDRILS LLRSLIVSRY NIVQTNAAAS IVNLSLEKPN KLKIVRSGFV PLLIDVLKSG
301: STEAQEHVIG ALFSLAVEEE NKMVIGVLGA VEPLLHALRS SESERARQDA ALALYHLSLI PNNRSRLVKA GAVPMMLSMI RSGESASRIL LLLCNLAACS
401: EGKGAMLDGN AVSILVGKLR ESGGAESDAA ARENCVGALL TLSVGNMRFR GLASEAGAEE ILTEIVESES GSGRLKEKAS KILQTLRGGG SEFGEGAEAR
501: EWNRMLEASG LSRSQFQQGG QKGGFAYSSQ F

Arabidopsis Description

PUB39RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178V8W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.