Factsheet for GSMUA_Achr7P19940_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	57.09	66.08
GSMUA_Achr3P06000_001	Banana	plastid	51.04	52.02
GSMUA_Achr9P14450_001	Banana	plastid	45.18	51.4
GSMUA_Achr5P05220_001	Banana	mitochondrion	46.5	50.72
Zm00001d044773_P001	Maize	cytosol	43.29	49.67
TraesCS7D01G196500.1	Wheat	mitochondrion	47.45	48.64
Os06t0238000-00	Rice	plasma membrane	47.45	48.46
TraesCS7A01G194900.1	Wheat	mitochondrion	46.69	47.87
HORVU7Hr1G039760.2	Barley	mitochondrion	47.07	47.52
TraesCS7B01G100600.1	Wheat	mitochondrion	46.69	47.5
KXG19688	Sorghum	plastid	46.5	45.72
Zm00001d005699_P001	Maize	mitochondrion	45.37	45.03
OQU89450	Sorghum	mitochondrion	48.58	43.78
HORVU6Hr1G043090.2	Barley	cytosol	30.06	43.68
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	45.75	43.6
Os09t0386200-01	Rice	plasma membrane	44.99	43.51
HORVU4Hr1G008170.1	Barley	cytosol	15.12	43.48
Zm00001d020358_P001	Maize	mitochondrion	45.75	43.14
TraesCS5A01G201400.1	Wheat	mitochondrion	45.18	43.06
TraesCS7D01G229000.1	Wheat	mitochondrion	43.48	42.75
TraesCS7B01G194100.1	Wheat	mitochondrion	43.67	42.7
TraesCS7A01G225500.1	Wheat	mitochondrion	43.48	42.59
TraesCS5B01G200100.1	Wheat	mitochondrion	45.18	42.53
TraesCS5D01G207500.1	Wheat	mitochondrion	45.18	42.53
HORVU7Hr1G046920.1	Barley	mitochondrion	42.91	42.04
Os06t0238200-00	Rice	plasma membrane	38.56	41.55
HORVU4Hr1G082630.1	Barley	plastid	10.96	41.43
Bra018108.1-P	Field mustard	cytosol	24.95	40.49
HORVU6Hr1G091220.1	Barley	plastid	14.37	39.38
CDY69575	Canola	cytosol	36.29	39.34
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	12.67	38.73
Solyc02g087200.1.1	Tomato	mitochondrion	34.78	38.25
CDY30728	Canola	cytosol	36.67	38.04
PGSC0003DMT400001437	Potato	mitochondrion	34.78	37.86
CDY24151	Canola	cytosol	33.84	37.84
Os08t0421850-00	Rice	mitochondrion	40.45	36.58
OQU80448	Sorghum	mitochondrion	39.51	36.47
KRH54443	Soybean	cytosol, mitochondrion	35.35	36.1
GSMUA_Achr9P28140_001	Banana	cytosol	32.14	36.02
KRH63473	Soybean	cytosol, plastid	35.73	36.0
Bra029250.1-P	Field mustard	cytosol	37.24	35.69
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	35.16	35.56
Zm00001d032264_P001	Maize	mitochondrion	38.37	35.43
EER92069	Sorghum	cytosol	38.37	35.3
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	36.11	35.11
HORVU6Hr1G008010.2	Barley	plastid	12.48	35.11
CDY36926	Canola	cytosol	33.65	34.63
AT5G62560.1	Thale cress	cytosol	36.29	34.35
CDY44594	Canola	cytosol, plastid	35.54	34.24
Bra035890.1-P	Field mustard	mitochondrion, plastid	35.73	33.81
Bra031875.1-P	Field mustard	mitochondrion	34.78	33.7
CDY16770	Canola	cytosol, mitochondrion	35.54	33.69
CDY33979	Canola	mitochondrion	35.16	33.63
Bra025605.1-P	Field mustard	cytosol, plastid	35.73	33.63
CDY37807	Canola	mitochondrion	34.78	33.58
CDY53109	Canola	cytosol, plastid	35.16	33.57
CDX87251	Canola	mitochondrion	35.73	33.57
AT3G47820.1	Thale cress	cytosol	33.65	33.52
AT5G40140.1	Thale cress	plastid	34.59	33.27
AT5G65200.1	Thale cress	cytosol, mitochondrion	34.4	32.73
KRG93403	Soybean	cytosol	33.84	31.51
Solyc03g113870.1.1	Tomato	cytosol	30.81	30.87
PGSC0003DMT400062863	Potato	cytosol	31.19	30.84
KRH18582	Soybean	cytosol	33.84	29.49

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr7G19940_001	EnsemblPlants:GSMUA_Achr7P19940_001	EnsemblPlants:GSMUA_Achr7T19940_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M0TJ31	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF98	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002948A2C
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Putative U-box domain-containing protein 41 [Source:GMGC_GENE;Acc:GSMUA_Achr7G19940_001]

Coordinates

chr7:-:22941467..22943503

Molecular Weight (calculated)

55704.7 Da

IEP (calculated)

8.279

GRAVY (calculated)

-0.041

Length

529 amino acids

Sequence
(BLAST)

001: MGSSKQRWKL SFRRSVATSP STSASTSPAP SFTAEMPVEF LCPISRSIMA DPVIIHSGHT FERSCIQACL DLAFPPPGLP LDLHLPFSSP EAAPPLLLIS
101: NAALKAAIVA WCSRCGLPPP LPIPPEAAVA IVRRLMPQDQ PLPPSAAASV ATGSAANKSS SFSSASTPSS ASYHSSSSYS SSEIVVVDER LGREQAPRFT
201: NSPSRRTTDA MEEVLTKLTD LDEGDQESAA AALRQATRES CDRRVALCTP QLLGALRPML LSSCAAVQIN TAAALANLSL EPVNKVRILR SGIVPAIVEV
301: LRRGHSEARD HAAGALFGLA LQDENRTTMG VLGAIPPLLN LFARHSADGP RARRDAGMAL YHLSLAAANR TKIARAPGAP ARIALMVIHN LASCNEGRAA
401: LMDAGAVAAL VALMRGPPLE AAEEEHCVAV LYWMSQGSLR FRGLAKAAGA EQELTRVATE GGGRGPRGEM ARRALRAIQG EEGDNEAAAS LGFDLGDDVS
501: SALSDGLMSL RPRRNVFDNR PAGINSAKF

Best Arabidopsis Sequence Match ( AT5G62560.1 )
(BLAST)

001: MGGNKQRWFS FHQRSSSATT TTLPQHKHDE TPPEFLCPIT GFLMSDPVVV SSGQTFERLS VQVCRNLGYI PDLLDGTRPD LSTVIPNLAM KSTIFSWCDR
101: QKVDHPRPPD AAYVEGVVRA RMDKDPNPSP GQSPGPGDKD PEPEILPPVE ENSPSDYDAV MEAIRARSKN SMSPTTSLES VTIGQSSYHP VRAVSMFSSS
201: TTSSSSGVFA GADSPFRNAM SFSSTDHSSS PMSPEEEEIF NKLRGTDIFD HEQGLILLRK MTRSSEDLRV SLCTDRILSF LRSLLVSRYN LVQTNAAASV
301: VNLSLEKQNK VKIVRSGFVP LLIDVLKSGT TEAQEHVAGA LFSLALEDEN KMVIGVLGAV EPLLHALRSS ESERARQDAA LALYHLSLIP SNRTRLVRAG
401: AVPTLLSMVR SGDSTSRILL VLCNLAACPD GKGAMLDGNA VAILVGKLRE VGGGDSEAAR ENCVAVLLTL CQGNLRFRGL ASEAGAEEVL MEVEENGNER
501: VKEKASKILL AMRGGGGGES EFGENAEARE WNRMLEATGL SRTQFQGGQN GGFAYSSQF

Arabidopsis Description

PUB41U-box domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q0WUF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.