Factsheet for HORVU5Hr1G059910.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G200100.1	Wheat	mitochondrion	90.27	89.15
TraesCS5A01G201400.1	Wheat	mitochondrion	87.93	87.93
HORVU6Hr1G091220.1	Barley	plastid	28.83	82.9
TraesCS5D01G207500.1	Wheat	mitochondrion	83.24	82.21
HORVU6Hr1G043090.2	Barley	cytosol	52.79	80.49
HORVU4Hr1G008170.1	Barley	cytosol	24.68	74.46
Os09t0386200-01	Rice	plasma membrane	73.33	74.41
HORVU4Hr1G082630.1	Barley	plastid	18.56	73.57
Zm00001d020358_P001	Maize	mitochondrion	65.59	64.88
Zm00001d005699_P001	Maize	mitochondrion	61.98	64.54
OQU89450	Sorghum	mitochondrion	67.93	64.22
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	19.64	63.01
HORVU6Hr1G008010.2	Barley	plastid	19.82	58.51
HORVU7Hr1G046920.1	Barley	mitochondrion	51.35	52.78
EER92069	Sorghum	cytosol	49.73	48.0
GSMUA_Achr10P...	Banana	cytosol	39.46	47.92
GSMUA_Achr5P05220_001	Banana	mitochondrion	41.62	47.63
GSMUA_Achr3P06000_001	Banana	plastid	43.6	46.63
GSMUA_Achr7P19940_001	Banana	plastid	43.6	45.75
HORVU7Hr1G039760.2	Barley	mitochondrion	42.34	44.85
GSMUA_Achr9P14450_001	Banana	plastid	37.48	44.73
Bra018108.1-P	Field mustard	cytosol	23.06	39.26
Solyc02g087200.1.1	Tomato	mitochondrion	32.07	37.01
CDY69575	Canola	cytosol	32.43	36.89
CDY24151	Canola	cytosol	31.35	36.79
PGSC0003DMT400001437	Potato	mitochondrion	32.07	36.63
KRH63473	Soybean	cytosol, plastid	33.87	35.81
KRH54443	Soybean	cytosol, mitochondrion	33.33	35.71
CDY30728	Canola	cytosol	32.79	35.69
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	32.61	34.61
CDY36926	Canola	cytosol	31.89	34.44
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	33.69	34.38
AT5G65200.1	Thale cress	cytosol, mitochondrion	33.87	33.81
Bra029250.1-P	Field mustard	cytosol	33.51	33.7
CDX87251	Canola	mitochondrion	33.51	33.04
CDY44594	Canola	cytosol, plastid	32.43	32.79
AT5G62560.1	Thale cress	cytosol	32.97	32.74
Bra035890.1-P	Field mustard	mitochondrion, plastid	32.79	32.56
Bra031875.1-P	Field mustard	mitochondrion	31.89	32.42
AT5G40140.1	Thale cress	plastid	32.07	32.36
CDY37807	Canola	mitochondrion	31.89	32.3
AT3G47820.1	Thale cress	cytosol	30.81	32.2
Bra025605.1-P	Field mustard	cytosol, plastid	32.43	32.03
CDY16770	Canola	cytosol, mitochondrion	32.07	31.9
PGSC0003DMT400062863	Potato	cytosol	30.63	31.78
CDY53109	Canola	cytosol, plastid	31.71	31.77
CDY33979	Canola	mitochondrion	31.35	31.46
Solyc03g113870.1.1	Tomato	cytosol	29.73	31.25
KRG93403	Soybean	cytosol	30.63	29.93
KRH18582	Soybean	cytosol	30.99	28.34

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A287REJ3	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:HORVU5Hr1G059910	EnsemblPlants:HORVU5Hr1G059910.1	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF79
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000B47BC75	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287REJ3]

Coordinates

chrchr5H:+:467836849..467839703

Molecular Weight (calculated)

57544.5 Da

IEP (calculated)

7.629

GRAVY (calculated)

-0.067

Length

555 amino acids

Sequence
(BLAST)

001: MGAARPRRWR FPFQRSAPSS PSSKSLPPAP YSPARSAAAA DPGPERKWEE AAPPEFVCPL SGALMADPVI LPSGQTYERA CLQACSDLSF LPPGAGSGSD
101: AMIPNSALKA AIGTWCARSG LAAPRPPSKE AVREAVLRAM PPAAAAAADA KSVRTRRAAM ASSSNSSYSS PASAASTSTY TSSSEITPAE DDAAAKPVKE
201: AAKEVTQLEL PVDPLEDEVV ATVMDADEDG EVAAALAVLR DATRESAERR LALCTPRLLA ALRRVLLIPR HASARVDATA ALVNLSLEPV NKVRIVRAGA
301: VPALVEVLRS GGSAPEAREH AAGALFGLAL NEENRAAIGV LGAVPPLLDL LTSPAHHPRA RRDAGMAIYH LSLAAVNQSK VARFPGASKA LLSVASSAAE
401: PTPIRKLALM VICNVGGCSE GRASLMDAGA VAAVSGILLS SHDVAELEEW CVAAIYALSR GSLRFRGLAR AAGADKALRR VAEEGTPGGV RREMARKTLR
501: AMRGDLDEEA DLTGSSLECG DGDDCGGSIV SDGLMSFRRR QREVGASSCG NTAEF

Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Arabidopsis Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.