Factsheet for Os09t0386200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	74.41	73.33
TraesCS5A01G201400.1	Wheat	mitochondrion	73.67	72.61
TraesCS5B01G200100.1	Wheat	mitochondrion	73.31	71.35
HORVU6Hr1G043090.2	Barley	cytosol	45.34	68.13
HORVU6Hr1G091220.1	Barley	plastid	23.77	67.36
TraesCS5D01G207500.1	Wheat	mitochondrion	68.74	66.9
Zm00001d005699_P001	Maize	mitochondrion	63.25	64.92
Zm00001d020358_P001	Maize	mitochondrion	66.18	64.53
OQU89450	Sorghum	mitochondrion	68.74	64.05
HORVU4Hr1G008170.1	Barley	cytosol	21.39	63.59
HORVU4Hr1G082630.1	Barley	plastid	15.36	60.0
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	16.27	51.45
Os08t0421850-00	Rice	mitochondrion	52.29	48.89
HORVU6Hr1G008010.2	Barley	plastid	16.64	48.4
GSMUA_Achr5P05220_001	Banana	mitochondrion	42.78	48.25
EER92069	Sorghum	cytosol	50.27	47.83
Os06t0238000-00	Rice	plasma membrane	43.69	46.14
GSMUA_Achr3P06000_001	Banana	plastid	43.14	45.47
GSMUA_Achr10P...	Banana	cytosol	37.84	45.3
GSMUA_Achr7P19940_001	Banana	plastid	43.51	44.99
GSMUA_Achr9P14450_001	Banana	plastid	38.21	44.95
Os06t0238200-00	Rice	plasma membrane	36.01	40.12
PGSC0003DMT400001437	Potato	mitochondrion	32.36	36.42
Bra018108.1-P	Field mustard	cytosol	21.57	36.2
Solyc02g087200.1.1	Tomato	mitochondrion	31.63	35.97
CDY69575	Canola	cytosol	31.81	35.66
CDY24151	Canola	cytosol	30.16	34.88
KRH63473	Soybean	cytosol, plastid	33.46	34.86
KRH54443	Soybean	cytosol, mitochondrion	32.91	34.75
CDY30728	Canola	cytosol	31.99	34.31
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	32.36	33.84
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	32.72	32.9
CDY36926	Canola	cytosol	30.53	32.49
Bra029250.1-P	Field mustard	cytosol	31.99	31.7
PGSC0003DMT400062863	Potato	cytosol	30.9	31.59
AT5G62560.1	Thale cress	cytosol	32.18	31.48
AT5G65200.1	Thale cress	cytosol, mitochondrion	31.99	31.47
CDY44594	Canola	cytosol, plastid	31.44	31.33
AT5G40140.1	Thale cress	plastid	31.44	31.27
CDX87251	Canola	mitochondrion	32.18	31.26
CDY37807	Canola	mitochondrion	31.26	31.2
Bra031875.1-P	Field mustard	mitochondrion	31.08	31.14
Solyc03g113870.1.1	Tomato	cytosol	29.98	31.06
AT3G47820.1	Thale cress	cytosol	29.8	30.7
Bra035890.1-P	Field mustard	mitochondrion, plastid	31.26	30.59
CDY53109	Canola	cytosol, plastid	30.9	30.51
Bra025605.1-P	Field mustard	cytosol, plastid	31.26	30.43
CDY16770	Canola	cytosol, mitochondrion	30.71	30.11
CDY33979	Canola	mitochondrion	30.35	30.02
KRG93403	Soybean	cytosol	29.25	28.17
KRH18582	Soybean	cytosol	29.62	26.69

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EntrezGene:4346948	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ProteinID:BAD26106.1	ProteinID:BAF24987.1	ProteinID:BAT07884.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EnsemblPlantsGene:Os09g0386200	EnsemblPlants:Os09t0386200-01	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF79	UniProt:Q6H593	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00003B4618	InterPro:Ubox_domain	RefSeq:XP_015651212.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

plant U-box-containing protein 18, U-box protein 18Armadillo-like helical domain containing protein. (Os09t0386200-01)

Coordinates

chr9:-:13164154..13166287

Molecular Weight (calculated)

57107.3 Da

IEP (calculated)

7.090

GRAVY (calculated)

-0.008

Length

547 amino acids

Sequence
(BLAST)

001: MGAGRPRRWK LPFHRSAPSS PSSPPDPEPH SPARSAVVVV AEEEAPPAEF VCSILGALMA DPVILPSGQT YERACLQACA ELAFLPPGMG SASDAVIPNA
101: ALKAAIGTWC ARSGRVVPAP PSADAAREAV LRAMPADAAK SVRTRRAALA SSSNSSYSSP ASAASTSSYT SSSEIIPAED EVGVKPVKEG TNKDAVREQV
201: EMAVDPLEDV VVAKVMDAEE EEEVVLAVAG LREATRESAE RRRALCTPRM LGALRRVLLI PRHASARVDA TAALVNLTLE PANKVRIVRA GAVPPLVEVL
301: RSSTSPPEAR EHAAGALFGL ALNEDNRAAI GVLGAVPPLL DLLTSPAHAA PARRDAGMAL YHLSLAAVNQ SKIARFPGAP KALLAVASSA AERMPIRRLA
401: LMVVCNVAAC TEGRAALMDA GAVAAVTAIL SHDTRSAELD EWCVAAMYAM SRGSLRFRGL ARAAGADAAL RRVAEECAPG IVRRDMARKT LRAMRNEADD
501: AADLTGSSLE CGDGDDCAGS IVSDGLMSFR RRQRELGSSS CGNTAEF

Best Arabidopsis Sequence Match ( AT5G40140.1 )
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Arabidopsis Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.