Factsheet for TraesCS5A01G201400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G200100.1	Wheat	mitochondrion	90.63	89.5
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	87.93	87.93
TraesCS5D01G207500.1	Wheat	mitochondrion	83.42	82.38
HORVU6Hr1G091220.1	Barley	plastid	28.29	81.35
HORVU6Hr1G043090.2	Barley	cytosol	51.53	78.57
Os09t0386200-01	Rice	plasma membrane	72.61	73.67
HORVU4Hr1G008170.1	Barley	cytosol	24.14	72.83
HORVU4Hr1G082630.1	Barley	plastid	18.2	72.14
Zm00001d020358_P001	Maize	mitochondrion	66.67	65.95
Zm00001d005699_P001	Maize	mitochondrion	63.06	65.67
OQU89450	Sorghum	mitochondrion	69.01	65.25
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	18.74	60.12
HORVU6Hr1G008010.2	Barley	plastid	19.1	56.38
TraesCS7A01G225500.1	Wheat	mitochondrion	52.61	54.07
EER92069	Sorghum	cytosol	50.63	48.87
GSMUA_Achr5P05220_001	Banana	mitochondrion	41.98	48.04
GSMUA_Achr10P...	Banana	cytosol	38.74	47.05
GSMUA_Achr3P06000_001	Banana	plastid	43.6	46.63
GSMUA_Achr9P14450_001	Banana	plastid	38.02	45.38
TraesCS7A01G194900.1	Wheat	mitochondrion	42.16	45.35
GSMUA_Achr7P19940_001	Banana	plastid	43.06	45.18
Bra018108.1-P	Field mustard	cytosol	23.6	40.18
CDY69575	Canola	cytosol	33.69	38.32
CDY24151	Canola	cytosol	32.07	37.63
Solyc02g087200.1.1	Tomato	mitochondrion	32.61	37.63
PGSC0003DMT400001437	Potato	mitochondrion	32.79	37.45
CDY30728	Canola	cytosol	33.33	36.27
KRH63473	Soybean	cytosol, plastid	34.23	36.19
KRH54443	Soybean	cytosol, mitochondrion	33.33	35.71
CDY36926	Canola	cytosol	32.79	35.41
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	34.59	35.29
VIT_17s0000g07730.t01	Wine grape	cytosol, plastid	33.15	35.18
Bra029250.1-P	Field mustard	cytosol	34.05	34.24
AT5G65200.1	Thale cress	cytosol, mitochondrion	33.33	33.27
CDX87251	Canola	mitochondrion	33.69	33.21
CDY44594	Canola	cytosol, plastid	32.61	32.97
AT5G40140.1	Thale cress	plastid	32.61	32.91
AT5G62560.1	Thale cress	cytosol	32.97	32.74
Bra035890.1-P	Field mustard	mitochondrion, plastid	32.79	32.56
AT3G47820.1	Thale cress	cytosol	30.99	32.39
PGSC0003DMT400062863	Potato	cytosol	31.17	32.34
CDY16770	Canola	cytosol, mitochondrion	32.43	32.26
Bra025605.1-P	Field mustard	cytosol, plastid	32.61	32.21
CDY53109	Canola	cytosol, plastid	32.07	32.13
Bra031875.1-P	Field mustard	mitochondrion	31.35	31.87
CDY37807	Canola	mitochondrion	31.35	31.75
Solyc03g113870.1.1	Tomato	cytosol	29.91	31.44
CDY33979	Canola	mitochondrion	30.99	31.1
KRG93403	Soybean	cytosol	30.63	29.93
KRH18582	Soybean	cytosol	31.35	28.67

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF79	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS5A01G201400	EnsemblPlants:TraesCS5A01G201400.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16453
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:407544718..407546646

Molecular Weight (calculated)

57591.5 Da

IEP (calculated)

7.791

GRAVY (calculated)

-0.061

Length

555 amino acids

Sequence
(BLAST)

001: MGAARPRRWR FPFQRSAPSS PSSKSLPPAP YSPARSAAAA YPEPDRKWEE EAAPPEFVCP LSGALMADPV ILPSGQTYER ACLQACAELS FLPPGAGSGS
101: DAMIPNSALK AAIGSWCARS GRAAPRPPSK EAARDAVLRA MPPAAAAAAE AKSVRTRRAA MASSSNSSYS SPASAASTST STSSSEITPA EEDAAVKPVK
201: EVELPVDPLE DEVVATVMDA DEDVEVAAAC ALLRDATRGS AERRLALCTP RLLAALRRVL LIPRHASARV DATAALVNLS LEPANKVRIV RAGAVPALVE
301: VLRSSGSAPE AREHAAGALF GLALNEENRA AIGVLGAVPP LLDLLTSPAH HPRARRDAGM AIYHLSLAAV NQSKVARFPG ASKALLTVAS SAVEPTPIRR
401: LALMVICNVG ACSEGRASLM DAGAVAAVSG ILLSAHDDAT RAALAELEEC CVAAIYALSR GSLRFRGLAR AAGADRALRR VAEEGTPGGV RREMARKTLR
501: AMRGDLDEEA DLTGSSLECG DGDDCGGSIV SDGLMSFRRR QREVGASSCG NTAEF

Best Arabidopsis Sequence Match ( AT5G65200.1 )
(BLAST)

001: MGKNGRLRWN PFSHRSSSST SSSSRQQQQE QQPPVEFLCP ISKSVMSDPV VVSSGQTFER VCVQVCRDLN FIPKLNDDEE SLPDFSNIIP NLNMKSTIDT
101: WCDTVGVSRP QPPDYSTVER ILRQQMPPPD VEIRVSEQEL LRAVAHRAPM IIHHADSELM GRRDFNNSTT SSDESVIVAH SPFTPLPLTT RPACFSPSPS
201: SSSSEIETLT HHTFFSNSTS TATEEDEVIY NKLKSSEIFD QEQGLIMMRK MTRTNDEARV SLCSPRILSL LKNMIVSRYS LVQTNALASL VNLSLDKKNK
301: LTIVRLGFVP ILIDVLKSGS REAQEHAAGT IFSLSLEDDN KMPIGVLGAL QPLLHALRAA ESDRTRHDSA LALYHLTLNQ TNRSKLVRLG AVPALFSMVR
401: SGESASRALL VICNLACCSE GRSAMLDANA VAILVGKLRE EWTEEPTEAR SSSSARENCV AALFALSHES LRFKGLAKEA RAVEVLKEVE ERGTERAREK
501: AKKILQLMRE RVPEDDEEDG EGSIDWDRVI DSNGSIRSRF RVGGRNRVVT QNSSGF

Arabidopsis Description

PUB38U-box domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP6]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.