Factsheet for Bra025605.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44594	Canola	cytosol, plastid	96.8	99.09
AT5G40140.1	Thale cress	plastid	83.27	85.09
Solyc02g087200.1.1	Tomato	mitochondrion	48.93	57.17
PGSC0003DMT400001437	Potato	mitochondrion	49.11	56.79
VIT_14s0066g01870.t01	Wine grape	cytosol, plastid	53.38	55.15
Bra018108.1-P	Field mustard	cytosol	29.18	50.31
KRG93403	Soybean	cytosol	49.82	49.3
Bra031875.1-P	Field mustard	mitochondrion	43.95	45.24
KRH18582	Soybean	cytosol	48.04	44.48
Bra029250.1-P	Field mustard	cytosol	41.46	42.21
Bra035890.1-P	Field mustard	mitochondrion, plastid	40.93	41.14
GSMUA_Achr9P14450_001	Banana	plastid	32.56	39.35
GSMUA_Achr3P06000_001	Banana	plastid	35.59	38.54
Os06t0238000-00	Rice	plasma membrane	34.7	37.64
GSMUA_Achr5P05220_001	Banana	mitochondrion	32.38	37.53
TraesCS7A01G194900.1	Wheat	mitochondrion	34.34	37.4
TraesCS7B01G100600.1	Wheat	mitochondrion	33.99	36.73
TraesCS7D01G196500.1	Wheat	mitochondrion	33.63	36.63
GSMUA_Achr10P...	Banana	cytosol	29.72	36.54
HORVU7Hr1G039760.2	Barley	mitochondrion	33.45	35.88
Zm00001d044773_P001	Maize	cytosol	29.36	35.79
GSMUA_Achr7P19940_001	Banana	plastid	33.63	35.73
HORVU4Hr1G082630.1	Barley	plastid	8.72	35.0
KXG19688	Sorghum	plastid	33.1	34.57
Os06t0238200-00	Rice	plasma membrane	29.72	34.01
HORVU6Hr1G043090.2	Barley	cytosol	21.89	33.79
HORVU4Hr1G008170.1	Barley	cytosol	11.03	33.7
Zm00001d005699_P001	Maize	mitochondrion	31.32	33.02
Zm00001d020358_P001	Maize	mitochondrion	32.74	32.8
TraesCS5A01G201400.1	Wheat	mitochondrion	32.21	32.61
HORVU5Hr1G059910.1	Barley	mitochondrion, plastid	32.03	32.43
TraesCS5B01G200100.1	Wheat	mitochondrion	31.85	31.85
TraesCS5D01G207500.1	Wheat	mitochondrion	31.85	31.85
Os09t0386200-01	Rice	plasma membrane	30.43	31.26
TraesCS7D01G229000.1	Wheat	mitochondrion	29.89	31.23
GSMUA_Achr9P28140_001	Banana	cytosol	25.62	30.51
TraesCS7A01G225500.1	Wheat	mitochondrion	29.0	30.19
OQU89450	Sorghum	mitochondrion	31.49	30.15
TraesCS7B01G194100.1	Wheat	mitochondrion	29.0	30.13
HORVU7Hr1G046920.1	Barley	mitochondrion	28.65	29.81
OQU80448	Sorghum	mitochondrion	29.89	29.32
Zm00001d032264_P001	Maize	mitochondrion	29.89	29.32
HORVU7Hr1G108260.3	Barley	cytosol, nucleus	8.9	28.9
Os08t0421850-00	Rice	mitochondrion	29.36	28.21
HORVU6Hr1G091220.1	Barley	plastid	9.43	27.46
HORVU6Hr1G008010.2	Barley	plastid	9.07	27.13
EER92069	Sorghum	cytosol	25.98	25.39

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra025605	EnsemblPlants:Bra025605.1	EnsemblPlants:Bra025605.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M4E9Z8	PFAM:PF00514	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF157	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002544D15
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT5G40140 (E=3e-215) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein

Coordinates

chrA04:+:7529563..7531251

Molecular Weight (calculated)

61099.5 Da

IEP (calculated)

8.833

GRAVY (calculated)

-0.222

Length

562 amino acids

Sequence
(BLAST)

001: MEIQRPIIKL MVLHSNHDKS DNLSRRESLP GKSKWRISLS RSPSSSSSKS NNSSPSKTEI PTEFLCPISG SLMADPVIVS SGHSYERACV IASKTLGFTP
101: TPSLPTSPPD FSTVIPNLAL KSAILSWCDR RSLPPPKPLD NAAAEKLVLS LMEKTHHRPT SRKVSISEKE LIQAIKDKPS VRLDHAATEL DRRPNYFNSS
201: SDESVASSSR TLQLATRPSC FSSPSSAEIE SLEPNPSPEE EALLVKLKSN RISDIEEALV SIRRVTRLDE GSRISLCSAR LISSLRSLIV SRYATVQVNA
301: TAVLVNLSLV KSNKVKIVRS GIVPPLIDVL KCGSSEAQEH SAGAIFSLAL EDENKTAIGV LGALEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV
401: KLGAVQVLLS MARLGQTMNR VLLILCNMAS CPVSRPALLD SGAVECMVGI LRGPREVTES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELTKVERSG
501: RERAKQKAKR VLEVMRAKME DDSSPENEEI DWEELLNSGS VTRSQHRLGG DGDKSPVNSS EF

Best Arabidopsis Sequence Match ( AT5G40140.1 )
(BLAST)

001: MEIQRPVINL MVLHSQHDKS DNLSRRESLA GKSKWRTSLS RSSSSSSSNN NSPTKTEIPA EFLCPISGSL MADPIIVSSG HSYERACVIA CKTLGFTPTP
101: PPDFSTVIPN LALKSAIHSW CERRCFPPPK PLNSAAAEKL ILALMEKKPQ RRKVSVSEKE LIQAIRDKPS VRLNHAATEL DRRPNYFNSS SDESIASSSR
201: TLQLTTKPSC FSSPSSGEIE SLEPNLTPEE EALLTKLKSN RISEIEEALI SIRRITRIDE SSRISLCTTR VISALKSLIV SRYATVQVNV TAVLVNLSLE
301: KSNKVKIVRS GIVPPLIDVL KCGSVEAQEH SAGVIFSLAL EDENKTAIGV LGGLEPLLHL IRVGTELTRH DSALALYHLS LVQSNRGKLV KLGAVQMLLG
401: MVSLGQMIGR VLLILCNMAS CPVSRPALLD SGGVECMVGV LRRDREVNES TRESCVAVLY GLSHDGGLRF KGLAMAANAV EELVKVERSG RERAKQKARR
501: VLEVLRAKIE DDDLVENEEI DWEELLNSGD VSRSRCRLGG EKSCVNSAEF

Arabidopsis Description

PUB40U-box domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL17]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.